Frontiers in Microbiology (Nov 2012)

Benthic nitrogen loss in the Arabian Sea off Pakistan

  • Sarah eSokoll,
  • Moritz eHoltappels,
  • Phyllis eLam,
  • Gavin eCollins,
  • Michael eSchlüter,
  • Gaute eLavik,
  • Marcel M. M. Kuypers

DOI
https://doi.org/10.3389/fmicb.2012.00395
Journal volume & issue
Vol. 3

Abstract

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A pronounced deficit of nitrogen (N) in the oxygen minimum zone (OMZ) of theArabian Sea suggests the occurrence of heavy N-loss that is commonly attributed to pelagicprocesses. However, the OMZ water is in direct contact with sediments on three sides of thebasin. Contribution from benthic N-loss to the total N-loss in the Arabian Sea remains largelyunassessed. In October 2007, we sampled the water column and surface sediments along atransect cross-cutting the Arabian Sea OMZ at the Pakistan continental margin, covering arange of station depths from 360 to 1430 m. Benthic denitrification and anammox rates weredetermined by using 15N-stable isotope pairing experiments. Intact core incubations showeddeclining rates of total benthic N-loss with water depth from 0.55 to 0.18 mmol N m-2 d-1.While denitrification rates measured in slurry incubations decreased from 2.73 to 1.46 mmolN m-2 d-1 with water depth, anammox rates increased from 0.21 to 0.89 mmol N m-2 d-1.Hence, the contribution from anammox to total benthic N-loss increased from 7% at 360 m to40% at 1430 m. This trend is further supported by the quantification of nirS, the biomarkerfunctional gene encoding for cytochrome cd1-nitrite reductases of microorganisms involved inboth N-loss processes. Anammox-like nirS genes within the sediments increased in proportionto total nirS gene copies with water depth. Moreover, phylogenetic analyses of nirS revealeddifferent communities of both denitrifying and anammox bacteria between shallow and deepstations. Together, rate measurement and nirS analyses showed that anammox, determined forthe first time in the Arabian Sea sediments, is an important benthic N-loss process at thecontinental margin off Pakistan, especially in the sediments at deeper water depths.Extrapolation from the measured benthic N-loss to all shelf sediments within the basinsuggests that benthic N-loss may be responsible for about half of the overall N-loss in theArabian Sea.

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