Estimating Photosynthetic Attributes from High-Throughput Canopy Hyperspectral Sensing in Sorghum

Abstract

Sorghum, a genetically diverse C4 cereal, is an ideal model to study natural variation in photosynthetic capacity. Specific leaf nitrogen (SLN) and leaf mass per leaf area (LMA), as well as, maximal rates of Rubisco carboxylation (Vcmax), phosphoenolpyruvate (PEP) carboxylation (Vpmax), and electron transport (Jmax), quantified using a C4 photosynthesis model, were evaluated in two field-grown training sets (n=169 plots including 124 genotypes) in 2019 and 2020. Partial least square regression (PLSR) was used to predict Vcmax (R2=0.83), Vpmax (R2=0.93), Jmax (R2=0.76), SLN (R2=0.82), and LMA (R2=0.68) from tractor-based hyperspectral sensing. Further assessments of the capability of the PLSR models for Vcmax, Vpmax, Jmax, SLN, and LMA were conducted by extrapolating these models to two trials of genome-wide association studies adjacent to the training sets in 2019 (n=875 plots including 650 genotypes) and 2020 (n=912 plots with 634 genotypes). The predicted traits showed medium to high heritability and genome-wide association studies using the predicted values identified four QTL for Vcmax and two QTL for Jmax. Candidate genes within 200 kb of the Vcmax QTL were involved in nitrogen storage, which is closely associated with Rubisco, while not directly associated with Rubisco activity per se. Jmax QTL was enriched for candidate genes involved in electron transport. These outcomes suggest the methods here are of great promise to effectively screen large germplasm collections for enhanced photosynthetic capacity.