Protocol for dissecting cascade computational components in neural networks of a visual system

Abstract

Summary: Finding the complete functional circuits of neurons is a challenging problem in brain research. Here, we present a protocol, based on visual stimuli and spikes, for obtaining the complete circuit of recorded neurons using spike-triggered nonnegative matrix factorization. We describe steps for data preprocessing, inferring the spatial receptive field of the subunits, and analyzing the module matrix. This approach identifies computational components of the feedforward network of retinal ganglion cells and dissects the network structure based on natural image stimuli.For complete details on the use and execution of this protocol, please refer to Jia et al. (2021).1 : Publisher’s note: Undertaking any experimental protocol requires adherence to local institutional guidelines for laboratory safety and ethics.

Keywords

• Bioinformatics
• Neuroscience
• Computer sciences