Frontiers in Microbiology (Nov 2016)

Artificial intelligence versus statistical modeling and optimization of continuous bead milling process for bacterial cell lysis

  • Shafiul Haque,
  • Shafiul Haque,
  • Saif Khan,
  • Mohd Wahid,
  • Sajad Ahmad Dar,
  • Nipunjot Soni,
  • Raju Kumar Mandal,
  • Vineeta Singh,
  • Dileep Tiwari,
  • Mohtashim Lohani,
  • Mohammed Y. Areeshi,
  • Thavendran Govender,
  • Gert Kruger,
  • ARSHAD JAWED,
  • ARSHAD JAWED

DOI
https://doi.org/10.3389/fmicb.2016.01852
Journal volume & issue
Vol. 7

Abstract

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AbstractFor a commercially viable recombinant intracellular protein production process, efficient cell lysis and protein release is a major bottleneck. The recovery of recombinant protein, cholesterol oxidase (COD) was studied in a continuous bead milling process. A full factorial Response Surface Model (RSM) design was employed and compared to Artificial Neural Networks coupled with Genetic Algorithm (ANN-GA). Significant process variables, cell slurry feed rate (A), bead load (B), cell load (C) and run time (D), were investigated and optimized for maximizing COD recovery. RSM predicted an optimum of feed rate of 310.73 mL/h, bead loading of 79.9% (v/v), cell loading OD600 nm of 74, and run time of 29.9 min with a recovery of ~3.2 g/L. ANN coupled with GA predicted a maximum COD recovery of ~3.5 g/L at an optimum feed rate (mL/h): 258.08, bead loading (%, v/v): 80%, cell loading (OD600 nm): 73.99, and run time of 32 min. An overall 3.7-fold increase in productivity is obtained when compared to a batch process. Optimization and comparison of statistical vs. artificial intelligence techniques in continuous bead milling process has been attempted for the very first time in our study. We were able to successfully represent the complex non-linear multivariable dependence of enzyme recovery on bead milling parameters. The quadratic second order response functions are not flexible enough to represent such complex non-linear dependence. ANN being a summation function of multiple layers are capable to represent complex non-linear dependence of variables in this case; enzyme recovery as a function of bead milling parameters. Since GA can even optimize discontinuous functions present study cites a perfect example of using machine learning (ANN) in combination with evolutionary optimization (GA) for representing undefined biological functions which is the case for common industrial processes involving biological moieties.

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