Genome-wide identification of NOD-like receptor genes in redclaw crayfish (Cherax quadricarinatus) and their responses to DIV1 infection

Abstract

Nucleotide-binding and oligomerization domain (NOD)-like receptors (NLRs), classified as pattern recognition receptors (PRRs), play crucial roles in innate immune responses. However, research on this topic in crustaceans remains limited. In the present study, 27 NLR family members were identified and characterized based on the redclaw crayfish genome. Gene structure, conserved domain, and motif analyses revealed that these NLR genes were classified into four subfamilies with three major domains, and phylogenetic and structural analyses further confirmed their evolutionary conservation. qRT-PCR analysis showed that the relative expression levels of several NLR genes changed significantly under the DIV1 challenge. More importantly, in vivo silencing of NAWD1 gene in Cherax quadricarinatus promoted DIV1 replication . These findings, together with those of previous studies, suggest that NLR genes in crustaceans may play a key role in immune responses to viral infections.

Keywords

• NLR genes
• Gene expression
• DIV1
• RNAi
• Cherax quadricarinatus