Exploring Autism Spectrum Disorder: A Comparative Study of Traditional Classifiers and Deep Learning Classifiers to Analyze Functional Connectivity Measures from a Multicenter Dataset

Abstract

The investigation of functional magnetic resonance imaging (fMRI) data with traditional machine learning (ML) and deep learning (DL) classifiers has been widely used to study autism spectrum disorders (ASDs). This condition is characterized by symptoms that affect the individual’s behavioral aspects and social relationships. Early diagnosis is crucial for intervention, but the complexity of ASD poses challenges for the development of effective treatments. This study compares traditional ML and DL classifiers in the analysis of tabular data, in particular, functional connectivity measures obtained from the time series of a public multicenter dataset, and evaluates whether the features that contribute most to the classification task vary depending on the classifier used. Specifically, Support Vector Machine (SVM) classifiers, with both linear and radial basis function (RBF) kernels, and Extreme Gradient Boosting (XGBoost) classifiers are compared against the TabNet classifier (a DL architecture customized for tabular data analysis) and a Multi Layer Perceptron (MLP). The findings suggest that DL classifiers may not be optimal for the type of data analyzed, as their performance trails behind that of standard classifiers. Among the latter, SVMs outperform the other classifiers with an AUC of around 75%, whereas the best performances of TabNet and MLP reach 65% and 71% at most, respectively. Furthermore, the analysis of the feature importance showed that the brain regions that contribute the most to the classification task are those primarily responsible for sensory and spatial perception, as well as attention modulation, which is known to be altered in ASDs.

Keywords

• ABIDE
• multi-site data
• deep learning
• machine learning
• autism spectrum disorders