Colección Boliviana de Fauna, Instituto de Ecología Carrera de Biología, Facultad de Ciencias Puras y Naturales, Universidad Mayor de San Andrés, La Paz 10077, Bolivia
Gilson A. Rivas
Departamento de Biología, Facultad Experimental de Ciencias, la Universidad del Zulia, Maracaibo 4001, Zulia, Venezuela
Sandra Mariotto
Instituto Federal de Educação, Ciência e Tecnologia de Mato Grosso, Cuiabá 78043-400, MT, Brazil
David Salazar-Valenzuela
Centro de Investigación de la Biodiversidad y Cambio Climático (BioCamb) e Ingeniería en Biodiversidad y Recursos Genéticos, Facultad de Ciencias del Medio Ambiente, Universidad Indoamérica, Quito 170103, Ecuador
Marcelo Tepeña Baihua
Baihuaeri Waorani People of Bameno, Ome Yasuni, Bameno 220301, Ecuador
Penti Baihua
Baihuaeri Waorani People of Bameno, Ome Yasuni, Bameno 220301, Ecuador
Gordon M. Burghardt
Departments of Psychology and Ecology & Evolutionary Biology, University of Tennessee, Knoxville, TN 37996, USA
Freek J. Vonk
Naturalis Biodiversity Center, 2333 CR Leiden, The Netherlands
Emil Hernandez
Laboratório de Zoologia Adriano Giorgi, Programa de Pós-Graduação em Biodiversidade e Conservação, Campus Universitário de Altamira, Universidade Federal do Pará, Altamira 68371-155, PA, Brazil
Juán Elías García-Pérez
Museo de Zoología, Programa CAM, Universidad Nacional Experimental de Los Llanos Occidentales Ezequiel Zamora, UNELLEZ, Guanare 3350, Portuguesa, Venezuela
Bryan G. Fry
Adaptive Biotoxicology Laboratory, School of the Environment, University of Queensland, St. Lucia, QLD 4072, Australia
Sarah Corey-Rivas
Biology Department, New Mexico Highlands University, 1005 Diamond Av., Las Vegas, NM 87701, USA
Anacondas, genus Eunectes, are a group of aquatic snakes with a wide distribution in South America. The taxonomic status of several species has been uncertain and/or controversial. Using genetic data from four recognized anaconda species across nine countries, this study investigates the phylogenetic relationships within the genus Eunectes. A key finding was the identification of two distinct clades within Eunectes murinus, revealing two species as cryptic yet genetically deeply divergent. This has led to the recognition of the Northern Green Anaconda as a separate species (Eunectes akayima sp. nov), distinct from its southern counterpart (E. murinus), the Southern Green Anaconda. Additionally, our data challenge the current understanding of Yellow Anaconda species by proposing the unification of Eunectes deschauenseei and Eunectes beniensis into a single species with Eunectes notaeus. This reclassification is based on comprehensive genetic and phylogeographic analyses, suggesting closer relationships than previously recognized and the realization that our understanding of their geographic ranges is insufficient to justify its use as a separation criterion. We also present a phylogeographic hypothesis that traces the Miocene diversification of anacondas in western South America. Beyond its academic significance, this study has vital implications for the conservation of these iconic reptile species, highlighting our lack of knowledge about the diversity of the South American fauna and the need for revised strategies to conserve the newly identified and reclassified species.