Capacitive deionization (CDI) with water disinfection materials is a potential method to produce fresh water from aqueous solutions. Therefore, an ordered mesoporous carbon with chitosan (OMC-CS) was coated on the active carbon (AC) electrode as a capacitive deionization disinfection (CDI) electrode. Comparing with OMC-CS-4,6,8 as CDI electrodes, it was found that OMC-CS-6 as a CDI electrode had an excellent disinfection efficiency, killing about 99.99% Escherichia coli (E. coli) in the CDI process at an applied 1.2 V. The OMC-CS material was did not pollute the water and will not contaminate to the environment in comparison with other chemical antibacterial agents. This CDI electrode could play a huge role in biocontaminated water in the future.