Scientific Data (Apr 2022)
A European-wide dataset to uncover adaptive traits of Listeria monocytogenes to diverse ecological niches
- Benjamin Félix,
- Yann Sevellec,
- Federica Palma,
- Pierre Emmanuel Douarre,
- Arnaud Felten,
- Nicolas Radomski,
- Ludovic Mallet,
- Yannick Blanchard,
- Aurélie Leroux,
- Christophe Soumet,
- Arnaud Bridier,
- Pascal Piveteau,
- Eliette Ascensio,
- Michel Hébraud,
- Renáta Karpíšková,
- Tereza Gelbíčová,
- Marina Torresi,
- Francesco Pomilio,
- Cesare Cammà,
- Adriano Di Pasquale,
- Taran Skjerdal,
- Ariane Pietzka,
- Werner Ruppitsch,
- Monica Ricão Canelhas,
- Bojan Papić,
- Ana Hurtado,
- Bart Wullings,
- Hana Bulawova,
- Hanna Castro,
- Miia Lindström,
- Hannu Korkeala,
- Žanete Šteingolde,
- Toomas Kramarenko,
- Lenka Cabanova,
- Barbara Szymczak,
- Manfred Gareis,
- Verena Oswaldi,
- Elisabet Marti,
- Anne-Mette Seyfarth,
- Jean-Charles Leblanc,
- Laurent Guillier,
- Sophie Roussel
Affiliations
- Benjamin Félix
- French Agency for Food, Environmental and Occupational Health & Safety (ANSES), Laboratory for Food Safety, Salmonella and Listeria Unit, Paris-Est University
- Yann Sevellec
- French Agency for Food, Environmental and Occupational Health & Safety (ANSES), Laboratory for Food Safety, Salmonella and Listeria Unit, Paris-Est University
- Federica Palma
- French Agency for Food, Environmental and Occupational Health & Safety (ANSES), Laboratory for Food Safety, Salmonella and Listeria Unit, Paris-Est University
- Pierre Emmanuel Douarre
- French Agency for Food, Environmental and Occupational Health & Safety (ANSES), Laboratory for Food Safety, Salmonella and Listeria Unit, Paris-Est University
- Arnaud Felten
- ANSES, Laboratory for Food Safety, Paris-Est University
- Nicolas Radomski
- ANSES, Laboratory for Food Safety, Paris-Est University
- Ludovic Mallet
- ANSES, Laboratory for Food Safety, Paris-Est University
- Yannick Blanchard
- ANSES, Ploufragan/Plouzané/Niort Laboratory, Viral Genetics and Bio-Security Unit, Université Européenne de Bretagne
- Aurélie Leroux
- ANSES, Ploufragan/Plouzané/Niort Laboratory, Viral Genetics and Bio-Security Unit, Université Européenne de Bretagne
- Christophe Soumet
- ANSES, Antibiotics, Biocides, Residues and Resistance Unit
- Arnaud Bridier
- ANSES, Antibiotics, Biocides, Residues and Resistance Unit
- Pascal Piveteau
- INRAE, Unité de recherche OPAALE
- Eliette Ascensio
- INRAE, Agroecologie, AgroSup Dijon, INRA, Univ. Bourgogne Franche-Comté
- Michel Hébraud
- INRAE, UCA, UMR MEDiS
- Renáta Karpíšková
- Veterinary Research Institute
- Tereza Gelbíčová
- Veterinary Research Institute
- Marina Torresi
- IZSAM, Istituto Zooprofilattico Sperimentale dell’Abruzzo e del Molise G.CaporaleVia Campo Boario
- Francesco Pomilio
- IZSAM, Istituto Zooprofilattico Sperimentale dell’Abruzzo e del Molise G.CaporaleVia Campo Boario
- Cesare Cammà
- IZSAM, Istituto Zooprofilattico Sperimentale dell’Abruzzo e del Molise G.CaporaleVia Campo Boario
- Adriano Di Pasquale
- IZSAM, Istituto Zooprofilattico Sperimentale dell’Abruzzo e del Molise G.CaporaleVia Campo Boario
- Taran Skjerdal
- Norwegian Veterinary Institute, Food Safety and Animal Health Research
- Ariane Pietzka
- AGES Austrian Agency for Health and Food Safety
- Werner Ruppitsch
- AGES Austrian Agency for Health and Food Safety
- Monica Ricão Canelhas
- Department of Biology, Swedish Food Agency
- Bojan Papić
- Institute of Microbiology and Parasitology, Veterinary Faculty, University of Ljubljana
- Ana Hurtado
- Animal Health Department, NEIKER – Basque Institute for Agricultural Research and Development, Basque Research and Technology Alliance (BRTA), Bizkaia Science and Technology Park 812 L
- Bart Wullings
- Wageningen Food Safety Research, Wageningen University & Research
- Hana Bulawova
- State Veterinary Institute
- Hanna Castro
- Department of Food Hygiene and Environmental Health, Faculty of Veterinary Medicine, University of Helsinki
- Miia Lindström
- Department of Food Hygiene and Environmental Health, Faculty of Veterinary Medicine, University of Helsinki
- Hannu Korkeala
- Department of Food Hygiene and Environmental Health, Faculty of Veterinary Medicine, University of Helsinki
- Žanete Šteingolde
- Institute of Food Safety, Animal Health and Environment BIOR
- Toomas Kramarenko
- Veterinary and Food Laboratory
- Lenka Cabanova
- State veterinary and food institute DVM, Department of Food Hygiene, Veterinary and food institute
- Barbara Szymczak
- Department of Applied Microbiology and Human Nutrition Physiology, West Pomeranian University of Technology
- Manfred Gareis
- Chair of Food Safety, Faculty of Veterinary Medicine, Ludwig-Maximilians-University Munich
- Verena Oswaldi
- Institute of Food Safety and Food Hygiene, Working Group Meat Hygiene, Faculty of Veterinary Medicine, Freie Universität Berlin
- Elisabet Marti
- Agroscope, Food Microbial Systems, Berne-Liebefeld
- Anne-Mette Seyfarth
- DTU, Technical University of Denmark, National Food Institute
- Jean-Charles Leblanc
- French Agency for Food, Environmental and Occupational Health & Safety (ANSES), Laboratory for Food Safety, Salmonella and Listeria Unit, Paris-Est University
- Laurent Guillier
- French Agency for Food, Environmental and Occupational Health & Safety (ANSES), Laboratory for Food Safety, Salmonella and Listeria Unit, Paris-Est University
- Sophie Roussel
- French Agency for Food, Environmental and Occupational Health & Safety (ANSES), Laboratory for Food Safety, Salmonella and Listeria Unit, Paris-Est University
- DOI
- https://doi.org/10.1038/s41597-022-01278-6
- Journal volume & issue
-
Vol. 9,
no. 1
pp. 1 – 12
Abstract
Measurement(s) whole genome sequencing Technology Type(s) Illumina Sequencing Factor Type(s) Multi-locus sequence types • Geographic location • Animal associated environment isolates • Food product and food production environment isolates Sample Characteristic - Organism Listeria monocytogenes Sample Characteristic - Environment Farm • Ruminant • Agricultural soil • Wild animals • food processing building • dairy food product • meat or meat product (from mammal) (us cfr) • chicken meat food product • fish food product • vegetable or vegetable product (us cfr) Sample Characteristic - Location Europe
