Whole genome sequencing data of Vigna nakashimae var. Ukushima and G418
Eri Ogiso-Tanaka,
Sompong Chankaew,
Takehisa Isemura,
Alisa Kongjaimun,
Akiko Baba,
Ken Naito,
Akito Kaga,
Norihiko Tomooka
Affiliations
Eri Ogiso-Tanaka
Genetic Resources Center, National Institute of Agrobiological Sciences (NIAS), 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan; Corresponding author.
Sompong Chankaew
Program in Plant Breeding, Faculty of Agriculture at Kamphaeng Saen, Kasetsart University, Kamphaeng Saen, Nakhon Pathom 73140, Thailand
Takehisa Isemura
Genetic Resources Center, National Institute of Agrobiological Sciences (NIAS), 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan
Alisa Kongjaimun
Research Fellow of the Japan Society for the Promotion of Science, Japan
Akiko Baba
Genetic Resources Center, National Institute of Agrobiological Sciences (NIAS), 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan
Ken Naito
Genetic Resources Center, National Institute of Agrobiological Sciences (NIAS), 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan
Akito Kaga
Genetic Resources Center, National Institute of Agrobiological Sciences (NIAS), 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan
Norihiko Tomooka
Genetic Resources Center, National Institute of Agrobiological Sciences (NIAS), 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan
Vigna nakashimae is one of the closely related species of Vigna angularis (Adzuki bean). Two strain of ‘Ukushima’ and ‘G418’ were identified as salt tolerance strains in Vigna nakashimae from gene bank collection. F2 populations from an inter- or intra-specific cross between the sensitive and tolerant strains are useful for the detection of salt tolerance QTL in Vigna nakashimae. Although Vigna angularis reference genome is available and useful for genetic analysis by genotyping-by-sequencing/RADseq in closely related species, it is not enough for isolation of responsible genes. To reveal sequence variation in Vigna nakashimae “Ukushima” and “G418”, the whole genome sequencing was performed using Illumina HiSeq X Ten system (411,174,986 and 478,116,282 read). NGS data was deposited in the DNA Data Bank of Japan (DDBJ) under accession number DRA009307. Keywords: Vigna nakashimae, Closely wild relatives of Adzuki bean, Next-generation sequencing, HiSeq, Whole genome sequencing
