Nature Communications (Mar 2016)
Data publication with the structural biology data grid supports live analysis
- Peter A. Meyer,
- Stephanie Socias,
- Jason Key,
- Elizabeth Ransey,
- Emily C. Tjon,
- Alejandro Buschiazzo,
- Ming Lei,
- Chris Botka,
- James Withrow,
- David Neau,
- Kanagalaghatta Rajashankar,
- Karen S. Anderson,
- Richard H. Baxter,
- Stephen C. Blacklow,
- Titus J. Boggon,
- Alexandre M. J. J. Bonvin,
- Dominika Borek,
- Tom J. Brett,
- Amedeo Caflisch,
- Chung-I Chang,
- Walter J. Chazin,
- Kevin D. Corbett,
- Michael S. Cosgrove,
- Sean Crosson,
- Sirano Dhe-Paganon,
- Enrico Di Cera,
- Catherine L. Drennan,
- Michael J. Eck,
- Brandt F. Eichman,
- Qing R. Fan,
- Adrian R. Ferré-D'Amaré,
- J. Christopher Fromme,
- K. Christopher Garcia,
- Rachelle Gaudet,
- Peng Gong,
- Stephen C. Harrison,
- Ekaterina E. Heldwein,
- Zongchao Jia,
- Robert J. Keenan,
- Andrew C. Kruse,
- Marc Kvansakul,
- Jason S. McLellan,
- Yorgo Modis,
- Yunsun Nam,
- Zbyszek Otwinowski,
- Emil F. Pai,
- Pedro José Barbosa Pereira,
- Carlo Petosa,
- C. S. Raman,
- Tom A. Rapoport,
- Antonina Roll-Mecak,
- Michael K. Rosen,
- Gabby Rudenko,
- Joseph Schlessinger,
- Thomas U. Schwartz,
- Yousif Shamoo,
- Holger Sondermann,
- Yizhi J. Tao,
- Niraj H. Tolia,
- Oleg V. Tsodikov,
- Kenneth D. Westover,
- Hao Wu,
- Ian Foster,
- James S. Fraser,
- Filipe R. N C. Maia,
- Tamir Gonen,
- Tom Kirchhausen,
- Kay Diederichs,
- Mercè Crosas,
- Piotr Sliz
Affiliations
- Peter A. Meyer
- Department of Biological Chemistry and Molecular Pharmacology
- Stephanie Socias
- Department of Biological Chemistry and Molecular Pharmacology
- Jason Key
- Department of Biological Chemistry and Molecular Pharmacology
- Elizabeth Ransey
- Department of Biological Chemistry and Molecular Pharmacology
- Emily C. Tjon
- Department of Biological Chemistry and Molecular Pharmacology
- Alejandro Buschiazzo
- Laboratory of Molecular & Structural Microbiology, Institut Pasteur de Montevideo
- Ming Lei
- Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences
- Chris Botka
- Harvard Medical School
- James Withrow
- NE-CAT and Department of Chemistry and Chemical Biology, Cornell University
- David Neau
- NE-CAT and Department of Chemistry and Chemical Biology, Cornell University
- Kanagalaghatta Rajashankar
- NE-CAT and Department of Chemistry and Chemical Biology, Cornell University
- Karen S. Anderson
- Departments of Pharmacology and Molecular Biophysics and Biochemistry, Yale University School of Medicine
- Richard H. Baxter
- Department of Chemistry, Molecular Biophysics and Biochemistry, Yale University
- Stephen C. Blacklow
- Department of Biological Chemistry and Molecular Pharmacology
- Titus J. Boggon
- Departments of Pharmacology and Molecular Biophysics and Biochemistry, Yale University School of Medicine
- Alexandre M. J. J. Bonvin
- Bijvoet Center, Faculty of Science, Utrecht University
- Dominika Borek
- Departments of Biophysics and Biochemistry, University of Texas Southwestern Medical Center
- Tom J. Brett
- Department of Internal Medicine, Washington University School of Medicine
- Amedeo Caflisch
- Department of Biochemistry, University of Zurich
- Chung-I Chang
- Institute of Biological Chemistry, Academia Sinica
- Walter J. Chazin
- Departments of Biochemistry and Chemistry, Center for Structural Biology, Vanderbilt University
- Kevin D. Corbett
- Ludwig Institute for Cancer Research, San Diego Branch
- Michael S. Cosgrove
- Department of Biochemistry and Molecular Biology, SUNY Upstate Medical University
- Sean Crosson
- Department of Biochemistry and Molecular Biology, University of Chicago
- Sirano Dhe-Paganon
- Department of Cancer Biology, Dana-Farber Cancer Institute
- Enrico Di Cera
- Edward A. Doisy Department of Biochemistry and Molecular Biology, Saint Louis University School of Medicine
- Catherine L. Drennan
- Departments of Chemistry and Biology and the Howard Hughes Medical Institute, Massachusetts Institute of Technology
- Michael J. Eck
- Department of Biological Chemistry and Molecular Pharmacology
- Brandt F. Eichman
- Department of Biological Sciences and Center for Structural Biology, Vanderbilt University
- Qing R. Fan
- Departments of Pharmacology and Pathology and Cell Biology, Columbia University
- Adrian R. Ferré-D'Amaré
- Laboratory of RNA Biophysics, National Heart, Lung and Blood Institute, NIH
- J. Christopher Fromme
- Department of Molecular Biology and Genetics, Weill Institute for Cell and Molecular Biology, Cornell University
- K. Christopher Garcia
- Howard Hughes Medical Institute, Stanford University School of Medicine
- Rachelle Gaudet
- Department of Molecular and Cellular Biology, Harvard University
- Peng Gong
- Key Laboratory of Special Pathogens and Biosafety, Wuhan Institute of Virology, Chinese Academy of Sciences
- Stephen C. Harrison
- Department of Biological Chemistry and Molecular Pharmacology
- Ekaterina E. Heldwein
- Department of Molecular Biology and Microbiology, Tufts University School of Medicine
- Zongchao Jia
- Department of Biomedical and Molecular Sciences, Queen’s University
- Robert J. Keenan
- Department of Biochemistry and Molecular Biology, University of Chicago
- Andrew C. Kruse
- Department of Biological Chemistry and Molecular Pharmacology
- Marc Kvansakul
- Department of Biochemistry and Genetics, La Trobe University
- Jason S. McLellan
- Department of Biochemistry, Geisel School of Medicine at Dartmouth
- Yorgo Modis
- Department of Medicine, University of Cambridge, MRC Laboratory of Molecular Biology
- Yunsun Nam
- University of Texas, Southwestern Medical Center
- Zbyszek Otwinowski
- Departments of Biophysics and Biochemistry, University of Texas Southwestern Medical Center
- Emil F. Pai
- Departments of Biochemistry, Medical Biophysics and Molecular Genetics, University of Toronto
- Pedro José Barbosa Pereira
- IBMC—Instituto de Biologia Molecular e Celular and Instituto de Investigação e Inovação em Saúde, Universidade do Porto
- Carlo Petosa
- Université Grenoble Alpes/CNRS/CEA, Institut de Biologie Structurale
- C. S. Raman
- Department of Pharmaceutical Sciences, University of Maryland
- Tom A. Rapoport
- Department of Cell Biology, Howard Hughes Medical Institute and Harvard Medical School
- Antonina Roll-Mecak
- Cell Biology and Biophysics Unit, Porter Neuroscience Research Center, National Institute of Neurological Disorders and Stroke
- Michael K. Rosen
- Department of Biophysics and Howard Hughes Medical Institute, University of Texas Southwestern Medical Center
- Gabby Rudenko
- Department of Pharmacology and Toxicology, Sealy Center for Structural Biology and Molecular Biophysics, University of Texas Medical Branch
- Joseph Schlessinger
- Department of Pharmacology, Yale University School of Medicine
- Thomas U. Schwartz
- Department of Biology, Massachusetts Institute of Technology
- Yousif Shamoo
- Department of BioSciences, Rice University
- Holger Sondermann
- Department of Molecular Medicine, College of Veterinary Medicine, Cornell University
- Yizhi J. Tao
- Department of BioSciences, Rice University
- Niraj H. Tolia
- Department of Molecular Microbiology, Washington University School of Medicine
- Oleg V. Tsodikov
- Department of Pharmaceutical Sciences, College of Pharmacy, University of Kentucky
- Kenneth D. Westover
- Departments of Biochemistry and Radiation Oncology, University of Texas, Southwestern Medical Center
- Hao Wu
- Department of Biological Chemistry and Molecular Pharmacology
- Ian Foster
- Mathematics and Computer Science Division, and Department of Computer Science, Argonne National Laboratory, Argonne, Illinois, University of Chicago
- James S. Fraser
- Department of Bioengineering and Therapeutic Sciences, University of California San Francisco
- Filipe R. N C. Maia
- Department of Cell and Molecular Biology, Laboratory of Molecular Biophysics, Uppsala University
- Tamir Gonen
- Janelia Research Campus, Howard Hughes Medical Institute
- Tom Kirchhausen
- Program in Cellular and Molecular Medicine and Department of Pediatrics, Boston Children's Hospital
- Kay Diederichs
- Department of Biology, University of Konstanz
- Mercè Crosas
- Institute for Quantitative Social Science, Harvard University
- Piotr Sliz
- Department of Biological Chemistry and Molecular Pharmacology
- DOI
- https://doi.org/10.1038/ncomms10882
- Journal volume & issue
-
Vol. 7,
no. 1
pp. 1 – 12
Abstract
The validation and analysis of X-ray crystallographic data is essential for reproducibility and the development of crystallographic methods. Here, the authors describe a repository for crystallographic datasets and demonstrate some of the ways it could serve the crystallographic community.
