GigaScience (Nov 2016)
2015 Brainhack Proceedings
- R. Cameron Craddock,
- Pierre Bellec,
- Daniel S. Margules,
- B. Nolan Nichols,
- Jörg P. Pfannmöller,
- AmanPreet Badhwar,
- David Kennedy,
- Jean-Baptiste Poline,
- Roberto Toro,
- Ben Cipollini,
- Ariel Rokem,
- Daniel Clark,
- Krzysztof J. Gorgolewski,
- R. Cameron Craddock,
- R. Cameron Craddock,
- Daniel J. Clark,
- Samir Das,
- Cécile Madjar,
- Ayan Sengupta,
- Zia Mohades,
- Sebastien Dery,
- Weiran Deng,
- Eric Earl,
- Damion V. Demeter,
- Kate Mills,
- Glad Mihai,
- Luka Ruzic,
- Nick Ketz,
- Andrew Reineberg,
- Marianne C. Reddan,
- Anne-Lise Goddings,
- Javier Gonzalez-Castillo,
- Krzysztof J. Gorgolewski,
- Caroline Froehlich,
- Gil Dekel,
- Daniel S. Margulies,
- R. Cameron Craddock,
- Ben D. Fulcher,
- Tristan Glatard,
- Samir Das,
- Reza Adalat,
- Natacha Beck,
- Rémi Bernard,
- Najmeh Khalili-Mahani,
- Pierre Rioux,
- Marc-Étienne Rousseau,
- Alan C. Evans,
- Yaroslav O. Halchenko,
- Matteo Visconti di Oleggio Castello,
- Raúl Hernández-Pérez,
- Edgar A. Morales,
- Laura V. Cuaya,
- Kaori L. Ito,
- Sook-Lei Liew,
- Hans J. Johnson,
- Erik Kan,
- Julia Anglin,
- Michael Borich,
- Neda Jahanshad,
- Paul Thompson,
- Sook-Lei Liew,
- Daniel S. Margulies,
- Marcel Falkiewicz,
- Julia M. Huntenburg,
- David O’Connor,
- Daniel J. Clark,
- Michael P. Milham,
- R. Cameron Craddock,
- Ramon Fraga Pereira,
- Anibal Sólon Heinsfeld,
- Alexandre Rosa Franco,
- Augusto Buchweitz,
- Felipe Meneguzzi,
- Jörg P. Pfannmöller,
- Rickson Mesquita,
- Luis C. T. Herrera,
- Daniela Dentico,
- Vanessa Sochat,
- B. Nolan Nichols,
- Anibal Sólon Heinsfeld,
- Alexandre Rosa Franco,
- Augusto Buchweitz,
- Felipe Meneguzzi,
- Julio E. Villalon-Reina,
- Eleftherios Garyfallidis
Affiliations
- R. Cameron Craddock
- Computational Neuroimaging Lab, Center for Biomedical Imaging and Neuromodulation, Nathan Kline Institute for Psychiatric Research
- Pierre Bellec
- Centre de Recherche, Institut Universitaire de Gériatrie de Montréal
- Daniel S. Margules
- Max Planck Research Group for Neuroanatomy & Connectivity, Max Planck Institute for Human Cognitive and Brain Sciences
- B. Nolan Nichols
- SRI International
- Jörg P. Pfannmöller
- Functional Imaging Unit, Center for Diagnostic Radiology, Unviersity Medicine Greifswald
- AmanPreet Badhwar
- Centre de Recherche, Institut Universitaire de Gériatrie de Montréal
- David Kennedy
- University of Massachusetts Medical School
- Jean-Baptiste Poline
- University of California
- Roberto Toro
- Institut Pasteur
- Ben Cipollini
- University of California
- Ariel Rokem
- University of Washington
- Daniel Clark
- Center for the Developing Brain, Child Mind Institute
- Krzysztof J. Gorgolewski
- Poldrack Lab, Department of Psychology, Stanford University
- R. Cameron Craddock
- Center for the Developing Brain, Child Mind Institute
- R. Cameron Craddock
- Computational Neuroimaging Lab, Center for Biomedical Imaging and Neuromodulation, Nathan Kline Institute for Psychiatric Research
- Daniel J. Clark
- Center for the Developing Brain, Child Mind Institute
- Samir Das
- Montréal Neurological Institute, McGill University and Institute of Pscychology
- Cécile Madjar
- Douglas Mental Health Institute
- Ayan Sengupta
- Otto-von-Guericke University
- Zia Mohades
- Montréal Neurological Institute, McGill University and Institute of Pscychology
- Sebastien Dery
- Montreal Neurological Institute, McGill University
- Weiran Deng
- University of Hawaii John A. Burns School of Medicine
- Eric Earl
- Oregon Health & Science University
- Damion V. Demeter
- Oregon Health & Science University
- Kate Mills
- Oregon Health & Science University
- Glad Mihai
- University of Greifswald
- Luka Ruzic
- Duke Institute for Brain Sciences
- Nick Ketz
- Department of Psychology and Neuroscience, University of Colorado
- Andrew Reineberg
- Institute of Cognitive Neuroscience, University College London
- Marianne C. Reddan
- Department of Psychology and Neuroscience, University of Colorado
- Anne-Lise Goddings
- Institute of Cognitive Neuroscience, University College London
- Javier Gonzalez-Castillo
- Section on Functional Imaging Methods, Laboratory of Brain and Cognition, National Institute of Mental Health
- Krzysztof J. Gorgolewski
- Department of Psychology, Stanford University
- Caroline Froehlich
- Computational Neuroimaging Lab, Center for Biomedical Imaging and Neuromodulation, Nathan Kline Institute for Psychiatric Research
- Gil Dekel
- City University of New York-Hunter College
- Daniel S. Margulies
- Max Planck Research Group for Neuroanatomy & Connectivity, Max Planck Institute for Human Cognitive and Brain Sciences
- R. Cameron Craddock
- Computational Neuroimaging Lab, Center for Biomedical Imaging and Neuromodulation, Nathan Kline Institute for Psychiatric Research
- Ben D. Fulcher
- Monash Institute of Cognitive and Clinical Neurosciences, Monash University
- Tristan Glatard
- McGill Centre for Integrative Neuroscience (MCIN), Ludmer Centre for Neuroinformatics and Mental Health, Montreal Neurological Institute (MNI), McGill University
- Samir Das
- McGill Centre for Integrative Neuroscience (MCIN), Ludmer Centre for Neuroinformatics and Mental Health, Montreal Neurological Institute (MNI), McGill University
- Reza Adalat
- McGill Centre for Integrative Neuroscience (MCIN), Ludmer Centre for Neuroinformatics and Mental Health, Montreal Neurological Institute (MNI), McGill University
- Natacha Beck
- McGill Centre for Integrative Neuroscience (MCIN), Ludmer Centre for Neuroinformatics and Mental Health, Montreal Neurological Institute (MNI), McGill University
- Rémi Bernard
- McGill Centre for Integrative Neuroscience (MCIN), Ludmer Centre for Neuroinformatics and Mental Health, Montreal Neurological Institute (MNI), McGill University
- Najmeh Khalili-Mahani
- McGill Centre for Integrative Neuroscience (MCIN), Ludmer Centre for Neuroinformatics and Mental Health, Montreal Neurological Institute (MNI), McGill University
- Pierre Rioux
- McGill Centre for Integrative Neuroscience (MCIN), Ludmer Centre for Neuroinformatics and Mental Health, Montreal Neurological Institute (MNI), McGill University
- Marc-Étienne Rousseau
- McGill Centre for Integrative Neuroscience (MCIN), Ludmer Centre for Neuroinformatics and Mental Health, Montreal Neurological Institute (MNI), McGill University
- Alan C. Evans
- McGill Centre for Integrative Neuroscience (MCIN), Ludmer Centre for Neuroinformatics and Mental Health, Montreal Neurological Institute (MNI), McGill University
- Yaroslav O. Halchenko
- Department of Pscyhological & Brain Sciences, Dartmouth College
- Matteo Visconti di Oleggio Castello
- Department of Pscyhological & Brain Sciences, Dartmouth College
- Raúl Hernández-Pérez
- Instituto de Neurobiología
- Edgar A. Morales
- Instituto de Neurobiología
- Laura V. Cuaya
- Instituto de Neurobiología
- Kaori L. Ito
- Neural Plasticity and Neurorehabilitation Laboratory, Chan Division of Occupational Science and Occupational Therapy, Division of Biokinesiology and Physical Therapy, Keck School of Medicine Department of Neurology, University of Southern California
- Sook-Lei Liew
- Neural Plasticity and Neurorehabilitation Laboratory, Chan Division of Occupational Science and Occupational Therapy, Division of Biokinesiology and Physical Therapy, Keck School of Medicine Department of Neurology, University of Southern California
- Hans J. Johnson
- Carver College of Medicine, The University of Iowa
- Erik Kan
- The Saban Research Institute of Children’s Hospital
- Julia Anglin
- Chan Division of Occupational Science and Occupational Therapy, USC
- Michael Borich
- Division of Physical Therapy, Department of Rehabilitation Medicine, Emory University School of Medicine
- Neda Jahanshad
- Imaging Genetics Center, Laboratory of Neuro Imaging, Keck School of Medicine of USC, University of Southern California
- Paul Thompson
- Imaging Genetics Center, Laboratory of Neuro Imaging, Keck School of Medicine of USC, University of Southern California
- Sook-Lei Liew
- Chan Division of Occupational Science and Occupational Therapy, Division of Biokinesiology and Physical Therapy, Department of Neurology of the Keck School of Medicine, USC
- Daniel S. Margulies
- Max Planck Research Group for Neuroanatomy & Connectivity, Max Planck Institute for Human Cognitive and Brain Sciences
- Marcel Falkiewicz
- Max Planck Research Group for Neuroanatomy & Connectivity, Max Planck Institute for Human Cognitive and Brain Sciences
- Julia M. Huntenburg
- Max Planck Research Group for Neuroanatomy & Connectivity, Max Planck Institute for Human Cognitive and Brain Sciences
- David O’Connor
- Center for Biomedical Imaging and Neuromodulation, Nathan Kline Institute for Psychiatric Research
- Daniel J. Clark
- Center for the Developing Brain, Child Mind Institute
- Michael P. Milham
- Center for Biomedical Imaging and Neuromodulation, Nathan Kline Institute for Psychiatric Research
- R. Cameron Craddock
- Center for Biomedical Imaging and Neuromodulation, Nathan Kline Institute for Psychiatric Research
- Ramon Fraga Pereira
- PUCRS
- Anibal Sólon Heinsfeld
- PUCRS
- Alexandre Rosa Franco
- PUCRS
- Augusto Buchweitz
- PUCRS
- Felipe Meneguzzi
- PUCRS
- Jörg P. Pfannmöller
- Functional Imaging Unit, Center for Diagnostic Radiology, Unviersity Medicine Greifswald
- Rickson Mesquita
- Institute of Physics, University of Campinas
- Luis C. T. Herrera
- Institute of Physics, University of Campinas
- Daniela Dentico
- Waisman Center, University of Wisconsin
- Vanessa Sochat
- Program in Biomedical Informatics, Stanford University
- B. Nolan Nichols
- SRI International
- Anibal Sólon Heinsfeld
- PUCRS
- Alexandre Rosa Franco
- PUCRS
- Augusto Buchweitz
- PUCRS
- Felipe Meneguzzi
- PUCRS
- Julio E. Villalon-Reina
- Imaging Genetics Center, Mark and Mary Stevens Neuroimagng and Informatics Institute, Keck School of Medicine of University of Southern California
- Eleftherios Garyfallidis
- Département d’informatique, Université de Sherbrooke
- DOI
- https://doi.org/10.1186/s13742-016-0147-0
- Journal volume & issue
-
Vol. 5,
no. S1
pp. 1 – 26
Abstract
Table of contents I1 Introduction to the 2015 Brainhack Proceedings R. Cameron Craddock, Pierre Bellec, Daniel S. Margules, B. Nolan Nichols, Jörg P. Pfannmöller A1 Distributed collaboration: the case for the enhancement of Brainspell’s interface AmanPreet Badhwar, David Kennedy, Jean-Baptiste Poline, Roberto Toro A2 Advancing open science through NiData Ben Cipollini, Ariel Rokem A3 Integrating the Brain Imaging Data Structure (BIDS) standard into C-PAC Daniel Clark, Krzysztof J. Gorgolewski, R. Cameron Craddock A4 Optimized implementations of voxel-wise degree centrality and local functional connectivity density mapping in AFNI R. Cameron Craddock, Daniel J. Clark A5 LORIS: DICOM anonymizer Samir Das, Cécile Madjar, Ayan Sengupta, Zia Mohades A6 Automatic extraction of academic collaborations in neuroimaging Sebastien Dery A7 NiftyView: a zero-footprint web application for viewing DICOM and NIfTI files Weiran Deng A8 Human Connectome Project Minimal Preprocessing Pipelines to Nipype Eric Earl, Damion V. Demeter, Kate Mills, Glad Mihai, Luka Ruzic, Nick Ketz, Andrew Reineberg, Marianne C. Reddan, Anne-Lise Goddings, Javier Gonzalez-Castillo, Krzysztof J. Gorgolewski A9 Generating music with resting-state fMRI data Caroline Froehlich, Gil Dekel, Daniel S. Margulies, R. Cameron Craddock A10 Highly comparable time-series analysis in Nitime Ben D. Fulcher A11 Nipype interfaces in CBRAIN Tristan Glatard, Samir Das, Reza Adalat, Natacha Beck, Rémi Bernard, Najmeh Khalili-Mahani, Pierre Rioux, Marc-Étienne Rousseau, Alan C. Evans A12 DueCredit: automated collection of citations for software, methods, and data Yaroslav O. Halchenko, Matteo Visconti di Oleggio Castello A13 Open source low-cost device to register dog’s heart rate and tail movement Raúl Hernández-Pérez, Edgar A. Morales, Laura V. Cuaya A14 Calculating the Laterality Index Using FSL for Stroke Neuroimaging Data Kaori L. Ito, Sook-Lei Liew A15 Wrapping FreeSurfer 6 for use in high-performance computing environments Hans J. Johnson A16 Facilitating big data meta-analyses for clinical neuroimaging through ENIGMA wrapper scripts Erik Kan, Julia Anglin, Michael Borich, Neda Jahanshad, Paul Thompson, Sook-Lei Liew A17 A cortical surface-based geodesic distance package for Python Daniel S Margulies, Marcel Falkiewicz, Julia M Huntenburg A18 Sharing data in the cloud David O’Connor, Daniel J. Clark, Michael P. Milham, R. Cameron Craddock A19 Detecting task-based fMRI compliance using plan abandonment techniques Ramon Fraga Pereira, Anibal Sólon Heinsfeld, Alexandre Rosa Franco, Augusto Buchweitz, Felipe Meneguzzi A20 Self-organization and brain function Jörg P. Pfannmöller, Rickson Mesquita, Luis C.T. Herrera, Daniela Dentico A21 The Neuroimaging Data Model (NIDM) API Vanessa Sochat, B Nolan Nichols A22 NeuroView: a customizable browser-base utility Anibal Sólon Heinsfeld, Alexandre Rosa Franco, Augusto Buchweitz, Felipe Meneguzzi A23 DIPY: Brain tissue classification Julio E. Villalon-Reina, Eleftherios Garyfallidis
