Nature Communications (Jan 2018)

A general and flexible method for signal extraction from single-cell RNA-seq data

  • Davide Risso,
  • Fanny Perraudeau,
  • Svetlana Gribkova,
  • Sandrine Dudoit,
  • Jean-Philippe Vert

DOI
https://doi.org/10.1038/s41467-017-02554-5
Journal volume & issue
Vol. 9, no. 1
pp. 1 – 17

Abstract

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Single-cell RNA sequencing (scRNA-seq) data provides information on transcriptomic heterogeneity within cell populations. Here, Risso et al develop ZINB-WaVE for low-dimensional representations of scRNA-seq data that account for zero inflation, over-dispersion, and the count nature of the data.