Genomics Data (Mar 2015)

Transcriptional profiling of MEF2-regulated genes in human neural progenitor cells derived from embryonic stem cells

  • Shing Fai Chan,
  • Xiayu Huang,
  • Scott R. McKercher,
  • Rameez Zaidi,
  • Shu-ichi Okamoto,
  • Nobuki Nakanishi,
  • Stuart A. Lipton

DOI
https://doi.org/10.1016/j.gdata.2014.10.022
Journal volume & issue
Vol. 3, no. C
pp. 24 – 27

Abstract

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The myocyte enhancer factor 2 (MEF2) family of transcription factors is highly expressed in the brain and constitutes a key determinant of neuronal survival, differentiation, and synaptic plasticity. However, genome-wide transcriptional profiling of MEF2-regulated genes has not yet been fully elucidated, particularly at the neural stem cell stage. Here we report the results of microarray analysis comparing mRNAs isolated from human neural progenitor/stem cells (hNPCs) derived from embryonic stem cells expressing a control vector versus progenitors expressing a constitutively-active form of MEF2 (MEF2CA), which increases MEF2 activity. Microarray experiments were performed using the Illumina Human HT-12 V4.0 expression beadchip (GEO#: GSE57184). By comparing vector-control cells to MEF2CA cells, microarray analysis identified 1880 unique genes that were differentially expressed. Among these genes, 1121 genes were up-regulated and 759 genes were down-regulated. Our results provide a valuable resource for identifying transcriptional targets of MEF2 in hNPCs.

Keywords