Analysis of the Association of Two SNPs in the Promoter Regions of the <i>PPP2R5C</i> and <i>SLC39A5</i> Genes with Litter Size in Yunshang Black Goats

Abstract

Screening for candidate genes and genetic variants associated with litter size is important for goat breeding. The aim of this study was to analyze the relationship between single nucleotide polymorphisms (SNPs) in PPP2R5C and SLC39A5 and litter size in Yunshang black goats. KASP genotyping was used to detect the SNP genetic markers in the PPP2R5C and SLC39A5 in a population of 569 Yunshang black goats. The results show that there were two SNPs in the PPP2R5C and SLC39A5 promoter regions. Association analysis revealed that the polymorphisms PPP2R5C g.65977743C>T and SLC39A5 g.50676693T>C were significantly associated with the litter size of the third parity of Yunshang black goats (p PPP2R5C and SLC39A5 was validated by RT-qPCR and Western blotting. The expression of PPP2R5C was significantly higher in individuals with the TT genotype than in those with the TC and CC genotypes (p SLC39A5 was also significantly higher in individuals with the TT genotype than in TC and CC genotypes (p PPP2R5C-C variant was significantly higher than that of PPP2R5C-T variant (p SLC39A5-T variant was significantly higher than that of SLC39A5-C variant (p SOX18, ZNF418, and ZNF667 and NKX2-4 and TBX6 might bind to PPP2R5C g.65977743C>T and SLC39A5 g.50676693T>C, respectively. These results provide new insights into the identification of candidate genes for marker-assisted selection (MAS) in goats.

Keywords

• goat
• litter size
• <i>PPP2R5C</i>
• <i>SLC39A5</i>
• single-nucleotide polymorphism (SNP)