PLoS Biology (Sep 2021)

Leveraging vibration of effects analysis for robust discovery in observational biomedical data science.

  • Braden T Tierney,
  • Elizabeth Anderson,
  • Yingxuan Tan,
  • Kajal Claypool,
  • Sivateja Tangirala,
  • Aleksandar D Kostic,
  • Arjun K Manrai,
  • Chirag J Patel

DOI
https://doi.org/10.1371/journal.pbio.3001398
Journal volume & issue
Vol. 19, no. 9
p. e3001398

Abstract

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Hypothesis generation in observational, biomedical data science often starts with computing an association or identifying the statistical relationship between a dependent and an independent variable. However, the outcome of this process depends fundamentally on modeling strategy, with differing strategies generating what can be called "vibration of effects" (VoE). VoE is defined by variation in associations that often lead to contradictory results. Here, we present a computational tool capable of modeling VoE in biomedical data by fitting millions of different models and comparing their output. We execute a VoE analysis on a series of widely reported associations (e.g., carrot intake associated with eyesight) with an extended additional focus on lifestyle exposures (e.g., physical activity) and components of the Framingham Risk Score for cardiovascular health (e.g., blood pressure). We leveraged our tool for potential confounder identification, investigating what adjusting variables are responsible for conflicting models. We propose modeling VoE as a critical step in navigating discovery in observational data, discerning robust associations, and cataloging adjusting variables that impact model output.