Geoscientific Model Development (Apr 2023)

Structural <i>k</i>-means (S <i>k</i>-means) and clustering uncertainty evaluation framework (CUEF) for mining climate data

  • Q.-V. Doan,
  • T. Amagasa,
  • T.-H. Pham,
  • T. Sato,
  • F. Chen,
  • H. Kusaka

DOI
https://doi.org/10.5194/gmd-16-2215-2023
Journal volume & issue
Vol. 16
pp. 2215 – 2233

Abstract

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Dramatic increases in climate data underlie a gradual paradigm shift in knowledge acquisition methods from physically based models to data-based mining approaches. One of the most popular data clustering/mining techniques is k-means, and it has been used to detect hidden patterns in climate systems; k-means is established based on distance metrics for pattern recognition, which is relatively ineffective when dealing with “structured” data, that is, data in time and space domains, which are dominant in climate science. Here, we propose (i) a novel structural-similarity-recognition-based k-means algorithm called structural k-means or S k-means for climate data mining and (ii) a new clustering uncertainty representation/evaluation framework based on the information entropy concept. We demonstrate that the novel S k-means could provide higher-quality clustering outcomes in terms of general silhouette analysis, although it requires higher computational resources compared with conventional algorithms. The results are consistent with different demonstration problem settings using different types of input data, including two-dimensional weather patterns, historical climate change in terms of time series, and tropical cyclone paths. Additionally, by quantifying the uncertainty underlying the clustering outcomes we, for the first time, evaluated the “meaningfulness” of applying a given clustering algorithm for a given dataset. We expect that this study will constitute a new standard of k-means clustering with “structural” input data, as well as a new framework for uncertainty representation/evaluation of clustering algorithms for (but not limited to) climate science.