STAR Protocols (Dec 2022)

Million spot binding array platform for exploring and optimizing multiple simultaneous detection events

  • Michael Gibbons,
  • Jessica M. Hong,
  • Mikelle Foster,
  • Mariya Chavarha,
  • Shirley Shao,
  • Llyke Ching,
  • Victoria A. Church,
  • Lauren Schiff,
  • Sara Ahadi,
  • Marc Berndl,
  • Phillip Jess,
  • Annalisa Pawlosky

Journal volume & issue
Vol. 3, no. 4
p. 101829

Abstract

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Summary: Large-scale, high-throughput specificity assays to characterize binding properties within a competitive and complex environment of potential binder-target pairs remain challenging and cost prohibitive. Barcode cycle sequencing (BCS) is a molecular binding assay for proteins, peptides, and other small molecules that is built on a next-generation sequencing (NGS) chip. BCS uses a binder library and targets labeled with unique DNA barcodes. Upon binding, binder barcodes are ligated to target barcodes and sequenced to identify encoded binding events.For complete details on the use and execution of this protocol, please refer to Hong et al. (2022). : Publisher’s note: Undertaking any experimental protocol requires adherence to local institutional guidelines for laboratory safety and ethics.

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