Wellcome Open Research (May 2021)
The genome sequence of the brown trout, Salmo trutta Linnaeus 1758 [version 1; peer review: 2 approved]
- Tom Hansen,
- Per Gunnar Fjelldal,
- Sigbjørn Lien,
- Michelle Smith,
- Craig Corton,
- Karen Oliver,
- Jason Skelton,
- Emma Betteridge,
- Jale Doulcan,
- Olivier Fedrigo,
- Jacquelyn Mountcastle,
- Erich Jarvis,
- Shane A. McCarthy,
- William Chow,
- Kerstin Howe,
- James Torrance,
- Jonathan Wood,
- Ying Sims,
- Leanne Haggerty,
- Richard Challis,
- Jonathan Threlfall,
- Daniel Mead,
- Richard Durbin,
- Mark Blaxter
Affiliations
- Tom Hansen
- Institute of Marine Research (IMR), Matredal, Norway
- Per Gunnar Fjelldal
- Institute of Marine Research (IMR), Matredal, Norway
- Sigbjørn Lien
- Norwegian University of Life Sciences, Ås, 1432, Norway
- Michelle Smith
- Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, UK
- Craig Corton
- Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, UK
- Karen Oliver
- Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, UK
- Jason Skelton
- Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, UK
- Emma Betteridge
- Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, UK
- Jale Doulcan
- Achilles Therapeutics plc, London, W6 8PW, UK
- Olivier Fedrigo
- The Rockefeller University, New York, New York, 10065, USA
- Jacquelyn Mountcastle
- The Rockefeller University, New York, New York, 10065, USA
- Erich Jarvis
- The Rockefeller University, New York, New York, 10065, USA
- Shane A. McCarthy
- Department of Genetics, University of Cambridge, Cambridge, CB2 3EH, UK
- William Chow
- Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, UK
- Kerstin Howe
- Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, UK
- James Torrance
- Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, UK
- Jonathan Wood
- Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, UK
- Ying Sims
- Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, UK
- Leanne Haggerty
- EMBL-EBI, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, UK
- Richard Challis
- Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, UK
- Jonathan Threlfall
- Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, UK
- Daniel Mead
- Owlstone Medical, Cambridge Science Park, Cambridge, CB4 0GJ, UK
- Richard Durbin
- Department of Genetics, University of Cambridge, Cambridge, CB2 3EH, UK
- Mark Blaxter
- Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, UK
- DOI
- https://doi.org/10.12688/wellcomeopenres.16838.1
- Journal volume & issue
-
Vol. 6
Abstract
We present a genome assembly from an individual female Salmo trutta (the brown trout; Chordata; Actinopteri; Salmoniformes; Salmonidae). The genome sequence is 2.37 gigabases in span. The majority of the assembly is scaffolded into 40 chromosomal pseudomolecules. Gene annotation of this assembly on Ensembl has identified 43,935 protein coding genes.
