G3: Genes, Genomes, Genetics (Feb 2022)
Genome assembly of the Australian black tiger shrimp (<i>Penaeus monodon</i>) reveals a novel fragmented IHHNV EVE sequence
- Roger Huerlimann,
- Jeff A Cowley,
- Nicholas M Wade,
- Yinan Wang,
- Naga Kasinadhuni,
- Chon-Kit Kenneth Chan,
- Jafar S Jabbari,
- Kirby Siemering,
- Lavinia Gordon,
- Matthew Tinning,
- Juan D Montenegro,
- Gregory E Maes,
- Melony J Sellars,
- Greg J Coman,
- Sean McWilliam,
- Kyall R Zenger,
- Mehar S Khatkar,
- Herman W Raadsma,
- Dallas Donovan,
- Gopala Krishna,
- Dean R Jerry
Affiliations
- Roger Huerlimann
- ORCiD
- ARC Industrial Transformation Research Hub for Advanced Prawn Breeding, James Cook University, Townsville, QLD 4811, Australia
- Jeff A Cowley
- ORCiD
- ARC Industrial Transformation Research Hub for Advanced Prawn Breeding, James Cook University, Townsville, QLD 4811, Australia
- Nicholas M Wade
- ORCiD
- ARC Industrial Transformation Research Hub for Advanced Prawn Breeding, James Cook University, Townsville, QLD 4811, Australia
- Yinan Wang
- ORCiD
- Australian Genome Research Facility Ltd, Level 13, Victorian Comprehensive Cancer Centre, Melbourne, VIC 3000, Australia
- Naga Kasinadhuni
- ORCiD
- Australian Genome Research Facility Ltd, Level 13, Victorian Comprehensive Cancer Centre, Melbourne, VIC 3000, Australia
- Chon-Kit Kenneth Chan
- ORCiD
- Australian Genome Research Facility Ltd, Level 13, Victorian Comprehensive Cancer Centre, Melbourne, VIC 3000, Australia
- Jafar S Jabbari
- ORCiD
- Australian Genome Research Facility Ltd, Level 13, Victorian Comprehensive Cancer Centre, Melbourne, VIC 3000, Australia
- Kirby Siemering
- ORCiD
- ARC Industrial Transformation Research Hub for Advanced Prawn Breeding, James Cook University, Townsville, QLD 4811, Australia
- Lavinia Gordon
- ORCiD
- Australian Genome Research Facility Ltd, Level 13, Victorian Comprehensive Cancer Centre, Melbourne, VIC 3000, Australia
- Matthew Tinning
- ORCiD
- ARC Industrial Transformation Research Hub for Advanced Prawn Breeding, James Cook University, Townsville, QLD 4811, Australia
- Juan D Montenegro
- ORCiD
- Australian Genome Research Facility Ltd, Level 13, Victorian Comprehensive Cancer Centre, Melbourne, VIC 3000, Australia
- Gregory E Maes
- ORCiD
- Centre for Sustainable Tropical Fisheries and Aquaculture, College of Science and Engineering, James Cook University, Townsville, QLD 4811, Australia
- Melony J Sellars
- ORCiD
- CSIRO Agriculture and Food, St Lucia, QLD 4067, Australia
- Greg J Coman
- ORCiD
- ARC Industrial Transformation Research Hub for Advanced Prawn Breeding, James Cook University, Townsville, QLD 4811, Australia
- Sean McWilliam
- ORCiD
- ARC Industrial Transformation Research Hub for Advanced Prawn Breeding, James Cook University, Townsville, QLD 4811, Australia
- Kyall R Zenger
- ORCiD
- ARC Industrial Transformation Research Hub for Advanced Prawn Breeding, James Cook University, Townsville, QLD 4811, Australia
- Mehar S Khatkar
- ORCiD
- ARC Industrial Transformation Research Hub for Advanced Prawn Breeding, James Cook University, Townsville, QLD 4811, Australia
- Herman W Raadsma
- ORCiD
- ARC Industrial Transformation Research Hub for Advanced Prawn Breeding, James Cook University, Townsville, QLD 4811, Australia
- Dallas Donovan
- ARC Industrial Transformation Research Hub for Advanced Prawn Breeding, James Cook University, Townsville, QLD 4811, Australia
- Gopala Krishna
- ARC Industrial Transformation Research Hub for Advanced Prawn Breeding, James Cook University, Townsville, QLD 4811, Australia
- Dean R Jerry
- ORCiD
- ARC Industrial Transformation Research Hub for Advanced Prawn Breeding, James Cook University, Townsville, QLD 4811, Australia
Abstract
AbstractShrimp are a valuable aquaculture species globally; however, disease remains a major hindrance to shrimp aquaculture sustainability and growth. Mechanisms mediated by endogenous viral elements have been proposed as a means by which shrimp that encounter a new virus start to accommodate rather than succumb to infection over time. However, evidence on the nature of such endogenous viral elements and how they mediate viral accommodation is limited. More extensive genomic data on Penaeid shrimp from different geographical locations should assist in exposing the diversity of endogenous viral elements. In this context, reported here is a PacBio Sequel-based draft genome assembly of an Australian black tiger shrimp (Penaeus monodonP. monodon
