Nature Communications (Feb 2021)

PopDel identifies medium-size deletions simultaneously in tens of thousands of genomes

  • Sebastian Niehus,
  • Hákon Jónsson,
  • Janina Schönberger,
  • Eythór Björnsson,
  • Doruk Beyter,
  • Hannes P. Eggertsson,
  • Patrick Sulem,
  • Kári Stefánsson,
  • Bjarni V. Halldórsson,
  • Birte Kehr

DOI
https://doi.org/10.1038/s41467-020-20850-5
Journal volume & issue
Vol. 12, no. 1
pp. 1 – 10

Abstract

Read online

Identifying structural variants (SVs) from whole genome sequence data has been a significant bioinformatic challenge. Here, the authors describe PopDel, which uses a joint SV detection approach to reliably and efficiently identify 500-10,000 bp deletions across large population cohorts.