Nature Communications (Jan 2020)

ASCOT identifies key regulators of neuronal subtype-specific splicing

  • Jonathan P. Ling,
  • Christopher Wilks,
  • Rone Charles,
  • Patrick J. Leavey,
  • Devlina Ghosh,
  • Lizhi Jiang,
  • Clayton P. Santiago,
  • Bo Pang,
  • Anand Venkataraman,
  • Brian S. Clark,
  • Abhinav Nellore,
  • Ben Langmead,
  • Seth Blackshaw

DOI
https://doi.org/10.1038/s41467-019-14020-5
Journal volume & issue
Vol. 11, no. 1
pp. 1 – 12

Abstract

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The increasing amount of raw RNA-seq data calls for new computational methods to mine information. Here, the authors present ASCOT, a computational resource to identify splice variants in RNA-seq data, and apply it to splicing patterns in neurons and unique splicing patterns in rod photoreceptors.