Marine Drugs (Nov 2024)

Genome-Based Mining of Carpatamides I–M and Their Candidate Biosynthetic Gene Cluster

  • Shu-Mei Shen,
  • Yun-Chang Xie,
  • Li-Rong Tu,
  • Miao-Er Wu,
  • Yan-Min Wang,
  • Chun-Hui Song,
  • Yu-Hui Sun,
  • Ming-He Luo

DOI
https://doi.org/10.3390/md22110521
Journal volume & issue
Vol. 22, no. 11
p. 521

Abstract

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Chemically investigating the marine-derived Streptomyces parvus 1268 led to the isolation of a new compound of carpatamide I (1). Subsequent genomic analysis identified its candidate biosynthetic gene cluster ctd of approximately 44 kb. In order to obtain more carpatamide derivatives, we conducted the upregulation of Ctd14, which is a positive regulator, and obtained improvement of carpatamide I and four new compounds of carpatamides J–M (2–5). The structures of the aforementioned five new isolates were identified by a combination of ESI-HRMS as well as one-dimensional (1D) and two-dimensional (2D) spectral NMR datasets. Bioassay results showed that compounds 1–5 displayed anti-inflammatory activity and weak cytotoxicity against cell lines of A549, HT-29, and HepG2.

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