Vaccines (Oct 2023)

Large-Scale Purification and Characterization of Recombinant Receptor-Binding Domain (RBD) of SARS-CoV-2 Spike Protein Expressed in Yeast

  • Gaurav Nagar,
  • Siddharth Jain,
  • Meghraj Rajurkar,
  • Rakesh Lothe,
  • Harish Rao,
  • Sourav Majumdar,
  • Manish Gautam,
  • Sergio A. Rodriguez-Aponte,
  • Laura E. Crowell,
  • J. Christopher Love,
  • Prajakta Dandekar,
  • Amita Puranik,
  • Sunil Gairola,
  • Umesh Shaligram,
  • Ratnesh Jain

DOI
https://doi.org/10.3390/vaccines11101602
Journal volume & issue
Vol. 11, no. 10
p. 1602

Abstract

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SARS-CoV-2 spike protein is an essential component of numerous protein-based vaccines for COVID-19. The receptor-binding domain of this spike protein is a promising antigen with ease of expression in microbial hosts and scalability at comparatively low production costs. This study describes the production, purification, and characterization of RBD of SARS-CoV-2 protein, which is currently in clinical trials, from a commercialization perspective. The protein was expressed in Pichia pastoris in a large-scale bioreactor of 1200 L capacity. Protein capture and purification are conducted through mixed-mode chromatography followed by hydrophobic interaction chromatography. This two-step purification process produced RBD with an overall productivity of ~21 mg/L at >99% purity. The protein’s primary, secondary, and tertiary structures were also verified using LCMS-based peptide mapping, circular dichroism, and fluorescence spectroscopy, respectively. The glycoprotein was further characterized for quality attributes such as glycosylation, molecular weight, purity, di-sulfide bonding, etc. Through structural analysis, it was confirmed that the product maintained a consistent quality across different batches during the large-scale production process. The binding capacity of RBD of spike protein was also assessed using human angiotensin-converting enzyme 2 receptor. A low binding constant range of KD values, ranging between 3.63 × 10−8 to 6.67 × 10−8, demonstrated a high affinity for the ACE2 receptor, revealing this protein as a promising candidate to prevent the entry of COVID-19 virus.

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