Datasets for genome assembly of six underutilized Indonesian fruits

Deden Derajat Matra; Arya Widura Ritonga; Azis Natawijaya; Roedhy Poerwanto; Sobir; Ulfah Juniarti Siregar; Winarso Drajad Widodo; Eiichi Inoue

Data in Brief (Feb 2019)

Datasets for genome assembly of six underutilized Indonesian fruits

Deden Derajat Matra,
Arya Widura Ritonga,
Azis Natawijaya,
Roedhy Poerwanto,
Sobir,
Ulfah Juniarti Siregar,
Winarso Drajad Widodo,
Eiichi Inoue

Affiliations

Deden Derajat Matra: Department of Agronomy and Horticulture, Faculty of Agriculture, Bogor Agricultural University, Indonesia; Corresponding author.
Arya Widura Ritonga: Department of Agronomy and Horticulture, Faculty of Agriculture, Bogor Agricultural University, Indonesia
Azis Natawijaya: Research and Development Division, Mekarsari Fruit Garden, Indonesia
Roedhy Poerwanto: Department of Agronomy and Horticulture, Faculty of Agriculture, Bogor Agricultural University, Indonesia
Sobir: Department of Agronomy and Horticulture, Faculty of Agriculture, Bogor Agricultural University, Indonesia
Ulfah Juniarti Siregar: Department of Silviculture, Faculty of Forestry, Bogor Agricultural University, Indonesia
Winarso Drajad Widodo: Department of Agronomy and Horticulture, Faculty of Agriculture, Bogor Agricultural University, Indonesia
Eiichi Inoue: College of Agriculture, Ibaraki University, Japan

Journal volume & issue: Vol. 22
pp. 960 – 963

Abstract

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Indonesia has a high genetic diversity of tropical fruits. However, studies on genomics are still very limited. In this data article, six underutilized Indonesian fruits were analyzed for the estimated genome size and partial data of genome assembly including Artocarpus nangkadak (Artocarpus heterophyllus x Artocarpus integer), Salacca sumatrana, Flacourtia inermis, Lansium domesticum, Pometia pinnata, and Syzygium samarangense. These genome data may be used to construct molecular markers for plant systematics and breeding program of these species. Our genome data were sequenced paired-end libraries using BGISeq-500 and generated approximately 5 Gb of bases per species. The raw sequences have been deposited in the DNA Data Bank of Japan (DDBJ) under the DDBJ BioProject umbrella with accession number PRJDB7265 and to the DDBJ Read Archive for each species following Artocarpus nangkadak (DRA007398), Salacca sumatrana (DRA007394), Flacourtia inermis (DRA007395), Lansium domesticum (DRA007393), Pometia pinnata (DRA007396), Syzygium samarangense (DRA007397).

Published in Data in Brief

ISSN: 2352-3409 (Online)
Publisher: Elsevier
Country of publisher: United States
LCC subjects: Medicine: Medicine (General): Computer applications to medicine. Medical informatics; Science: Science (General)
Website: http://www.journals.elsevier.com/data-in-brief/

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