Nature Communications (Apr 2019)

Network Walking charts transcriptional dynamics of nitrogen signaling by integrating validated and predicted genome-wide interactions

  • Matthew D. Brooks,
  • Jacopo Cirrone,
  • Angelo V. Pasquino,
  • Jose M. Alvarez,
  • Joseph Swift,
  • Shipra Mittal,
  • Che-Lun Juang,
  • Kranthi Varala,
  • Rodrigo A. Gutiérrez,
  • Gabriel Krouk,
  • Dennis Shasha,
  • Gloria M. Coruzzi

DOI
https://doi.org/10.1038/s41467-019-09522-1
Journal volume & issue
Vol. 10, no. 1
pp. 1 – 13

Abstract

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Temporal control of transcriptional networks enables organisms to adapt to changing environment. Here, the authors use a scaled-up cell-based assay to identify direct targets of nitrogen-early responsive transcription factors and validate a network path mediating dynamic nitrogen signaling in Arabidopsis.