Real-time structure search and structure classification for AlphaFold protein models

Tunde Aderinwale; Vijay Bharadwaj; Charles Christoffer; Genki Terashi; Zicong Zhang; Rashidedin Jahandideh; Yuki Kagaya; Daisuke Kihara

doi:10.1038/s42003-022-03261-8

Communications Biology (Apr 2022)

Real-time structure search and structure classification for AlphaFold protein models

Tunde Aderinwale,
Vijay Bharadwaj,
Charles Christoffer,
Genki Terashi,
Zicong Zhang,
Rashidedin Jahandideh,
Yuki Kagaya,
Daisuke Kihara

Affiliations

Tunde Aderinwale: Department of Computer Science, Purdue University
Vijay Bharadwaj: Department of Computer Science, Purdue University
Charles Christoffer: Department of Computer Science, Purdue University
Genki Terashi: Department of Biological Sciences, Purdue University
Zicong Zhang: Department of Computer Science, Purdue University
Rashidedin Jahandideh: Department of Computer Science, Purdue University
Yuki Kagaya: Department of Biological Sciences, Purdue University
Daisuke Kihara: Department of Computer Science, Purdue University

DOI: https://doi.org/10.1038/s42003-022-03261-8
Journal volume & issue: Vol. 5, no. 1
pp. 1 – 12

Abstract

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3D-AF-Surfer is presented as a computational resource for real-time protein structure comparison search between AlphaFold2 models and PDB entries within seconds to a few minutes.

Published in Communications Biology

ISSN: 2399-3642 (Online)
Publisher: Nature Portfolio
Country of publisher: United Kingdom
LCC subjects: Science: Biology (General)
Website: https://www.nature.com/commsbio/

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