Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, Santa Cruz, United States; Tromsø University Museum, UiT - The Arctic University of Norway, Tromsø, Norway
Grant D Zazula
Yukon Palaeontology Program, Government of Yukon, Whitehorse, Canada
Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, Santa Cruz, United States
Brianna K McHorse
Department of Organismal and Evolutionary Biology, Harvard University, Cambridge, United States
Joshua D Kapp
Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, Santa Cruz, United States
Mathias Stiller
Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, Santa Cruz, United States; Department of Translational Skin Cancer Research, German Consortium for Translational Cancer Research, Essen, Germany
Matthew J Wooller
College of Fisheries and Ocean Sciences, University of Alaska Fairbanks, Fairbanks, United States; Alaska Stable Isotope Facility, Water and Environmental Research Center, University of Alaska Fairbanks, Fairbanks, United States
Ludovic Orlando
Centre for GeoGenetics, Natural History Museum of Denmark, København K, Denmark; Université Paul Sabatier, Université de Toulouse, Toulouse, France
John Southon
Keck-CCAMS Group, Earth System Science Department, University of California, Irvine, Irvine, United States
Duane G Froese
Department of Earth and Atmospheric Sciences, University of Alberta, Edmonton, Canada
Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, Santa Cruz, United States; UCSC Genomics Institute, University of California, Santa Cruz, Santa Cruz, United States
The extinct ‘New World stilt-legged’, or NWSL, equids constitute a perplexing group of Pleistocene horses endemic to North America. Their slender distal limb bones resemble those of Asiatic asses, such as the Persian onager. Previous palaeogenetic studies, however, have suggested a closer relationship to caballine horses than to Asiatic asses. Here, we report complete mitochondrial and partial nuclear genomes from NWSL equids from across their geographic range. Although multiple NWSL equid species have been named, our palaeogenomic and morphometric analyses support the idea that there was only a single species of middle to late Pleistocene NWSL equid, and demonstrate that it falls outside of crown group Equus. We therefore propose a new genus, Haringtonhippus, for the sole species H. francisci. Our combined genomic and phenomic approach to resolving the systematics of extinct megafauna will allow for an improved understanding of the full extent of the terminal Pleistocene extinction event.