Nature Communications (Jun 2016)
The channel catfish genome sequence provides insights into the evolution of scale formation in teleosts
- Zhanjiang Liu,
- Shikai Liu,
- Jun Yao,
- Lisui Bao,
- Jiaren Zhang,
- Yun Li,
- Chen Jiang,
- Luyang Sun,
- Ruijia Wang,
- Yu Zhang,
- Tao Zhou,
- Qifan Zeng,
- Qiang Fu,
- Sen Gao,
- Ning Li,
- Sergey Koren,
- Yanliang Jiang,
- Aleksey Zimin,
- Peng Xu,
- Adam M. Phillippy,
- Xin Geng,
- Lin Song,
- Fanyue Sun,
- Chao Li,
- Xiaozhu Wang,
- Ailu Chen,
- Yulin Jin,
- Zihao Yuan,
- Yujia Yang,
- Suxu Tan,
- Eric Peatman,
- Jianguo Lu,
- Zhenkui Qin,
- Rex Dunham,
- Zhaoxia Li,
- Tad Sonstegard,
- Jianbin Feng,
- Roy G. Danzmann,
- Steven Schroeder,
- Brian Scheffler,
- Mary V. Duke,
- Linda Ballard,
- Huseyin Kucuktas,
- Ludmilla Kaltenboeck,
- Haixia Liu,
- Jonathan Armbruster,
- Yangjie Xie,
- Mona L. Kirby,
- Yi Tian,
- Mary Elizabeth Flanagan,
- Weijie Mu,
- Geoffrey C. Waldbieser
Affiliations
- Zhanjiang Liu
- The Fish Molecular Genetics and Biotechnology Laboratory, School of Fisheries, Aquaculture, and Aquatic Sciences and Program of Cell and Molecular Biosciences, Auburn University
- Shikai Liu
- The Fish Molecular Genetics and Biotechnology Laboratory, School of Fisheries, Aquaculture, and Aquatic Sciences and Program of Cell and Molecular Biosciences, Auburn University
- Jun Yao
- The Fish Molecular Genetics and Biotechnology Laboratory, School of Fisheries, Aquaculture, and Aquatic Sciences and Program of Cell and Molecular Biosciences, Auburn University
- Lisui Bao
- The Fish Molecular Genetics and Biotechnology Laboratory, School of Fisheries, Aquaculture, and Aquatic Sciences and Program of Cell and Molecular Biosciences, Auburn University
- Jiaren Zhang
- The Fish Molecular Genetics and Biotechnology Laboratory, School of Fisheries, Aquaculture, and Aquatic Sciences and Program of Cell and Molecular Biosciences, Auburn University
- Yun Li
- The Fish Molecular Genetics and Biotechnology Laboratory, School of Fisheries, Aquaculture, and Aquatic Sciences and Program of Cell and Molecular Biosciences, Auburn University
- Chen Jiang
- The Fish Molecular Genetics and Biotechnology Laboratory, School of Fisheries, Aquaculture, and Aquatic Sciences and Program of Cell and Molecular Biosciences, Auburn University
- Luyang Sun
- The Fish Molecular Genetics and Biotechnology Laboratory, School of Fisheries, Aquaculture, and Aquatic Sciences and Program of Cell and Molecular Biosciences, Auburn University
- Ruijia Wang
- The Fish Molecular Genetics and Biotechnology Laboratory, School of Fisheries, Aquaculture, and Aquatic Sciences and Program of Cell and Molecular Biosciences, Auburn University
- Yu Zhang
- The Fish Molecular Genetics and Biotechnology Laboratory, School of Fisheries, Aquaculture, and Aquatic Sciences and Program of Cell and Molecular Biosciences, Auburn University
- Tao Zhou
- The Fish Molecular Genetics and Biotechnology Laboratory, School of Fisheries, Aquaculture, and Aquatic Sciences and Program of Cell and Molecular Biosciences, Auburn University
- Qifan Zeng
- The Fish Molecular Genetics and Biotechnology Laboratory, School of Fisheries, Aquaculture, and Aquatic Sciences and Program of Cell and Molecular Biosciences, Auburn University
- Qiang Fu
- The Fish Molecular Genetics and Biotechnology Laboratory, School of Fisheries, Aquaculture, and Aquatic Sciences and Program of Cell and Molecular Biosciences, Auburn University
- Sen Gao
- The Fish Molecular Genetics and Biotechnology Laboratory, School of Fisheries, Aquaculture, and Aquatic Sciences and Program of Cell and Molecular Biosciences, Auburn University
- Ning Li
- The Fish Molecular Genetics and Biotechnology Laboratory, School of Fisheries, Aquaculture, and Aquatic Sciences and Program of Cell and Molecular Biosciences, Auburn University
- Sergey Koren
- National Center for Biodefense Analysis and Countermeasures Center
- Yanliang Jiang
- The Fish Molecular Genetics and Biotechnology Laboratory, School of Fisheries, Aquaculture, and Aquatic Sciences and Program of Cell and Molecular Biosciences, Auburn University
- Aleksey Zimin
- Institute for Physical Science and Technology, University of Maryland
- Peng Xu
- The Fish Molecular Genetics and Biotechnology Laboratory, School of Fisheries, Aquaculture, and Aquatic Sciences and Program of Cell and Molecular Biosciences, Auburn University
- Adam M. Phillippy
- National Center for Biodefense Analysis and Countermeasures Center
- Xin Geng
- The Fish Molecular Genetics and Biotechnology Laboratory, School of Fisheries, Aquaculture, and Aquatic Sciences and Program of Cell and Molecular Biosciences, Auburn University
- Lin Song
- The Fish Molecular Genetics and Biotechnology Laboratory, School of Fisheries, Aquaculture, and Aquatic Sciences and Program of Cell and Molecular Biosciences, Auburn University
- Fanyue Sun
- The Fish Molecular Genetics and Biotechnology Laboratory, School of Fisheries, Aquaculture, and Aquatic Sciences and Program of Cell and Molecular Biosciences, Auburn University
- Chao Li
- The Fish Molecular Genetics and Biotechnology Laboratory, School of Fisheries, Aquaculture, and Aquatic Sciences and Program of Cell and Molecular Biosciences, Auburn University
- Xiaozhu Wang
- The Fish Molecular Genetics and Biotechnology Laboratory, School of Fisheries, Aquaculture, and Aquatic Sciences and Program of Cell and Molecular Biosciences, Auburn University
- Ailu Chen
- The Fish Molecular Genetics and Biotechnology Laboratory, School of Fisheries, Aquaculture, and Aquatic Sciences and Program of Cell and Molecular Biosciences, Auburn University
- Yulin Jin
- The Fish Molecular Genetics and Biotechnology Laboratory, School of Fisheries, Aquaculture, and Aquatic Sciences and Program of Cell and Molecular Biosciences, Auburn University
- Zihao Yuan
- The Fish Molecular Genetics and Biotechnology Laboratory, School of Fisheries, Aquaculture, and Aquatic Sciences and Program of Cell and Molecular Biosciences, Auburn University
- Yujia Yang
- The Fish Molecular Genetics and Biotechnology Laboratory, School of Fisheries, Aquaculture, and Aquatic Sciences and Program of Cell and Molecular Biosciences, Auburn University
- Suxu Tan
- The Fish Molecular Genetics and Biotechnology Laboratory, School of Fisheries, Aquaculture, and Aquatic Sciences and Program of Cell and Molecular Biosciences, Auburn University
- Eric Peatman
- The Fish Molecular Genetics and Biotechnology Laboratory, School of Fisheries, Aquaculture, and Aquatic Sciences and Program of Cell and Molecular Biosciences, Auburn University
- Jianguo Lu
- The Fish Molecular Genetics and Biotechnology Laboratory, School of Fisheries, Aquaculture, and Aquatic Sciences and Program of Cell and Molecular Biosciences, Auburn University
- Zhenkui Qin
- The Fish Molecular Genetics and Biotechnology Laboratory, School of Fisheries, Aquaculture, and Aquatic Sciences and Program of Cell and Molecular Biosciences, Auburn University
- Rex Dunham
- The Fish Molecular Genetics and Biotechnology Laboratory, School of Fisheries, Aquaculture, and Aquatic Sciences and Program of Cell and Molecular Biosciences, Auburn University
- Zhaoxia Li
- The Fish Molecular Genetics and Biotechnology Laboratory, School of Fisheries, Aquaculture, and Aquatic Sciences and Program of Cell and Molecular Biosciences, Auburn University
- Tad Sonstegard
- United States Department of Agriculture, Bovine Functional Genomics Laboratory, Agricultural Research Service
- Jianbin Feng
- The Fish Molecular Genetics and Biotechnology Laboratory, School of Fisheries, Aquaculture, and Aquatic Sciences and Program of Cell and Molecular Biosciences, Auburn University
- Roy G. Danzmann
- Department of Integrative Biology, University of Guelph
- Steven Schroeder
- United States Department of Agriculture, Bovine Functional Genomics Laboratory, Agricultural Research Service
- Brian Scheffler
- USDA, ARS, Genomics and Bioinformatics Research Unit
- Mary V. Duke
- USDA, ARS, Genomics and Bioinformatics Research Unit
- Linda Ballard
- USDA, ARS, Genomics and Bioinformatics Research Unit
- Huseyin Kucuktas
- The Fish Molecular Genetics and Biotechnology Laboratory, School of Fisheries, Aquaculture, and Aquatic Sciences and Program of Cell and Molecular Biosciences, Auburn University
- Ludmilla Kaltenboeck
- The Fish Molecular Genetics and Biotechnology Laboratory, School of Fisheries, Aquaculture, and Aquatic Sciences and Program of Cell and Molecular Biosciences, Auburn University
- Haixia Liu
- The Fish Molecular Genetics and Biotechnology Laboratory, School of Fisheries, Aquaculture, and Aquatic Sciences and Program of Cell and Molecular Biosciences, Auburn University
- Jonathan Armbruster
- Department of Biological Sciences, Auburn University
- Yangjie Xie
- The Fish Molecular Genetics and Biotechnology Laboratory, School of Fisheries, Aquaculture, and Aquatic Sciences and Program of Cell and Molecular Biosciences, Auburn University
- Mona L. Kirby
- USDA-ARS Warmwater Aquaculture Research Unit
- Yi Tian
- The Fish Molecular Genetics and Biotechnology Laboratory, School of Fisheries, Aquaculture, and Aquatic Sciences and Program of Cell and Molecular Biosciences, Auburn University
- Mary Elizabeth Flanagan
- USDA-ARS Warmwater Aquaculture Research Unit
- Weijie Mu
- The Fish Molecular Genetics and Biotechnology Laboratory, School of Fisheries, Aquaculture, and Aquatic Sciences and Program of Cell and Molecular Biosciences, Auburn University
- Geoffrey C. Waldbieser
- USDA-ARS Warmwater Aquaculture Research Unit
- DOI
- https://doi.org/10.1038/ncomms11757
- Journal volume & issue
-
Vol. 7,
no. 1
pp. 1 – 13
Abstract
Catfish represent 6.3% of all vertebrate species, and occupy a phylogenetic position close to the common ancestor of bony fish. Liu et al. present a reference genome of the channel catfish, and reveal a genomic basis for the evolutionary loss of scales in these species.
