Journal of Algorithms & Computational Technology (Dec 2012)

Simulations of Light-Induced Molecular Transformations in Multiple Dimensions with Incremental Sparse Surrogates

  • David Mokrauer,
  • C. T. Kelley,
  • Alexei Bykhovski

DOI
https://doi.org/10.1260/1748-3018.6.4.577
Journal volume & issue
Vol. 6

Abstract

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Simulations of light-induced molecular conformational transformations have traditionally been limited to a single degree of freedom because of the complexity of potential energy calculations. We propose a method of simulation that incrementally builds a surrogate for the potential energy function by computing gridpoints in parallel. We incorporate Smolyak's algorithm for sparse interpolation as the energy surrogates since it keeps the number of gridpoints at a manageable number. Our multi-dimensional algorithm is applied to the molecule 2-butene whose transition path is well known.