Nature Communications (Apr 2023)
Major proliferation of transposable elements shaped the genome of the soybean rust pathogen Phakopsora pachyrhizi
- Yogesh K. Gupta,
- Francismar C. Marcelino-Guimarães,
- Cécile Lorrain,
- Andrew Farmer,
- Sajeet Haridas,
- Everton Geraldo Capote Ferreira,
- Valéria S. Lopes-Caitar,
- Liliane Santana Oliveira,
- Emmanuelle Morin,
- Stephanie Widdison,
- Connor Cameron,
- Yoshihiro Inoue,
- Kathrin Thor,
- Kelly Robinson,
- Elodie Drula,
- Bernard Henrissat,
- Kurt LaButti,
- Aline Mara Rudsit Bini,
- Eric Paget,
- Vasanth Singan,
- Christopher Daum,
- Cécile Dorme,
- Milan van Hoek,
- Antoine Janssen,
- Lucie Chandat,
- Yannick Tarriotte,
- Jake Richardson,
- Bernardo do Vale Araújo Melo,
- Alexander H. J. Wittenberg,
- Harrie Schneiders,
- Stephane Peyrard,
- Larissa Goulart Zanardo,
- Valéria Cristina Holtman,
- Flavie Coulombier-Chauvel,
- Tobias I. Link,
- Dirk Balmer,
- André N. Müller,
- Sabine Kind,
- Stefan Bohnert,
- Louisa Wirtz,
- Cindy Chen,
- Mi Yan,
- Vivian Ng,
- Pierrick Gautier,
- Maurício Conrado Meyer,
- Ralf Thomas Voegele,
- Qingli Liu,
- Igor V. Grigoriev,
- Uwe Conrath,
- Sérgio H. Brommonschenkel,
- Marco Loehrer,
- Ulrich Schaffrath,
- Catherine Sirven,
- Gabriel Scalliet,
- Sébastien Duplessis,
- H. Peter van Esse
Affiliations
- Yogesh K. Gupta
- 2Blades
- Francismar C. Marcelino-Guimarães
- Brazilian Agricultural Research Corporation - National Soybean Research Center (Embrapa Soja)
- Cécile Lorrain
- Pathogen Evolutionary Ecology, ETH Zürich
- Andrew Farmer
- National Center for Genome Resources
- Sajeet Haridas
- U.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory
- Everton Geraldo Capote Ferreira
- 2Blades
- Valéria S. Lopes-Caitar
- Brazilian Agricultural Research Corporation - National Soybean Research Center (Embrapa Soja)
- Liliane Santana Oliveira
- Brazilian Agricultural Research Corporation - National Soybean Research Center (Embrapa Soja)
- Emmanuelle Morin
- Université de Lorraine, INRAE, IAM
- Stephanie Widdison
- Syngenta Jealott’s Hill Int. Research Centre
- Connor Cameron
- National Center for Genome Resources
- Yoshihiro Inoue
- 2Blades
- Kathrin Thor
- 2Blades
- Kelly Robinson
- 2Blades
- Elodie Drula
- AFMB, Aix-Marseille Univ., INRAE
- Bernard Henrissat
- Department of Biological Sciences, King Abdulaziz University
- Kurt LaButti
- U.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory
- Aline Mara Rudsit Bini
- Brazilian Agricultural Research Corporation - National Soybean Research Center (Embrapa Soja)
- Eric Paget
- Bayer SAS, Crop Science Division
- Vasanth Singan
- U.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory
- Christopher Daum
- U.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory
- Cécile Dorme
- Bayer SAS, Crop Science Division
- Milan van Hoek
- KeyGene N.V.
- Antoine Janssen
- KeyGene N.V.
- Lucie Chandat
- Bayer SAS, Crop Science Division
- Yannick Tarriotte
- Bayer SAS, Crop Science Division
- Jake Richardson
- The John Innes Centre
- Bernardo do Vale Araújo Melo
- Departamento de Fitopatologia, Universidade Federal de Viçosa
- Alexander H. J. Wittenberg
- KeyGene N.V.
- Harrie Schneiders
- KeyGene N.V.
- Stephane Peyrard
- Bayer SAS, Crop Science Division
- Larissa Goulart Zanardo
- Departamento de Fitopatologia, Universidade Federal de Viçosa
- Valéria Cristina Holtman
- Departamento de Fitopatologia, Universidade Federal de Viçosa
- Flavie Coulombier-Chauvel
- Bayer SAS, Crop Science Division
- Tobias I. Link
- Institute of Phytomedicine, University of Hohenheim
- Dirk Balmer
- Syngenta Crop Protection AG
- André N. Müller
- Department of Plant Physiology, RWTH Aachen University
- Sabine Kind
- Department of Plant Physiology, RWTH Aachen University
- Stefan Bohnert
- Department of Plant Physiology, RWTH Aachen University
- Louisa Wirtz
- Department of Plant Physiology, RWTH Aachen University
- Cindy Chen
- U.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory
- Mi Yan
- U.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory
- Vivian Ng
- U.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory
- Pierrick Gautier
- Bayer SAS, Crop Science Division
- Maurício Conrado Meyer
- Brazilian Agricultural Research Corporation - National Soybean Research Center (Embrapa Soja)
- Ralf Thomas Voegele
- Institute of Phytomedicine, University of Hohenheim
- Qingli Liu
- Syngenta Crop Protection, LLC, Research Triangle Park
- Igor V. Grigoriev
- U.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory
- Uwe Conrath
- Department of Plant Physiology, RWTH Aachen University
- Sérgio H. Brommonschenkel
- Departamento de Fitopatologia, Universidade Federal de Viçosa
- Marco Loehrer
- Department of Plant Physiology, RWTH Aachen University
- Ulrich Schaffrath
- Department of Plant Physiology, RWTH Aachen University
- Catherine Sirven
- Bayer SAS, Crop Science Division
- Gabriel Scalliet
- Syngenta Crop Protection AG
- Sébastien Duplessis
- Université de Lorraine, INRAE, IAM
- H. Peter van Esse
- 2Blades
- DOI
- https://doi.org/10.1038/s41467-023-37551-4
- Journal volume & issue
-
Vol. 14,
no. 1
pp. 1 – 16
Abstract
Asian soybean rust caused by Phakopsora pachyrhizi is an important plant pathogen, but an accurate genome assembly for this fungus has been lacking. This study sequenced three independent P. pachyrhizi isolates and generated reference quality assemblies and genome annotations, representing a critical step for further in-depth studies of this pathogen and the development of new methods of control.
