EuPA Open Proteomics (Dec 2020)
Proceedings of the EuBIC-MS 2020 Developers’ Meeting
- Christopher Ashwood,
- Wout Bittremieux,
- Eric W. Deutsch,
- Nadezhda T. Doncheva,
- Viktoria Dorfer,
- Ralf Gabriels,
- Vladimir Gorshkov,
- Surya Gupta,
- Andrew R. Jones,
- Lukas Käll,
- Dominik Kopczynski,
- Lydie Lane,
- Ludwig Lautenbacher,
- Marc Legeay,
- Marie Locard-Paulet,
- Bart Mesuere,
- Yasset Perez-Riverol,
- Eugen Netz,
- Julianus Pfeuffer,
- Timo Sachsenberg,
- Renee Salz,
- Patroklos Samaras,
- Henning Schiebenhoefer,
- Tobias Schmidt,
- Veit Schwämmle,
- Alessio Soggiu,
- Julian Uszkoreit,
- Tim Van Den Bossche,
- Bart Van Puyvelde,
- Joeri Van Strien,
- Pieter Verschaffelt,
- Henry Webel,
- Sander Willems
Affiliations
- Christopher Ashwood
- European Bioinformatics Community for Mass Spectrometry ([email protected]), Denmark; Department of Cellular and Integrative Physiology, University of Nebraska Medical Center, Omaha, USA
- Wout Bittremieux
- European Bioinformatics Community for Mass Spectrometry ([email protected]), Denmark; Department of Computer Science, University of Antwerp, Antwerp, Belgium; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA 92093, USA
- Eric W. Deutsch
- European Bioinformatics Community for Mass Spectrometry ([email protected]), Denmark; Institute for Systems Biology, Seattle, WA 98109, USA
- Nadezhda T. Doncheva
- European Bioinformatics Community for Mass Spectrometry ([email protected]), Denmark; Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark; Center for non-coding RNA in Technology and Health, Department of Veterinary and Animal Sciences, University of Copenhagen, Denmark
- Viktoria Dorfer
- European Bioinformatics Community for Mass Spectrometry ([email protected]), Denmark; Bioinformatics Research Group, University of Applied Sciences Upper Austria, Hagenberg, Austria
- Ralf Gabriels
- European Bioinformatics Community for Mass Spectrometry ([email protected]), Denmark; VIB-UGent Center for Medical Biotechnology, VIB, Ghent, Belgium; Department of Biomolecular Medicine, Ghent University, Ghent, Belgium
- Vladimir Gorshkov
- European Bioinformatics Community for Mass Spectrometry ([email protected]), Denmark; Department of Biochemistry and Molecular Biology, University of Southern Denmark, Denmark
- Surya Gupta
- European Bioinformatics Community for Mass Spectrometry ([email protected]), Denmark; VIB-UGent Center for Medical Biotechnology, VIB, Ghent, Belgium; Department of Biomolecular Medicine, Ghent University, Ghent, Belgium
- Andrew R. Jones
- European Bioinformatics Community for Mass Spectrometry ([email protected]), Denmark; Institute of Systems, Molecular and Integrative Biology, University of Liverpool, UK
- Lukas Käll
- European Bioinformatics Community for Mass Spectrometry ([email protected]), Denmark; Science for Life Laboratory, KTH - Royal Institute of Technology, Solna, Stockholm, Sweden
- Dominik Kopczynski
- European Bioinformatics Community for Mass Spectrometry ([email protected]), Denmark; Leibniz-Institut für Analytische Wissenschaften - ISAS - e.V., Dortmund, Germany
- Lydie Lane
- European Bioinformatics Community for Mass Spectrometry ([email protected]), Denmark; SIB-Swiss Institute of Bioinformatics and Department of Microbiology and Molecular Medicine, Faculty of Medicine, Geneva University, Geneva, Switzerland
- Ludwig Lautenbacher
- European Bioinformatics Community for Mass Spectrometry ([email protected]), Denmark; Technical University of Munich, Chair for Proteomics and Bioanalytics, Freising, Germany
- Marc Legeay
- European Bioinformatics Community for Mass Spectrometry ([email protected]), Denmark; Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark
- Marie Locard-Paulet
- European Bioinformatics Community for Mass Spectrometry ([email protected]), Denmark; Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark; Corresponding author at: Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark.
- Bart Mesuere
- European Bioinformatics Community for Mass Spectrometry ([email protected]), Denmark; VIB-UGent Center for Medical Biotechnology, VIB, Ghent, Belgium; Department of Applied Mathematics, Computer Science and Statistics, Ghent University, Ghent, Belgium
- Yasset Perez-Riverol
- European Bioinformatics Community for Mass Spectrometry ([email protected]), Denmark; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
- Eugen Netz
- European Bioinformatics Community for Mass Spectrometry ([email protected]), Denmark; Applied Bioinformatics, Dept. of Computer Science, University of Tübingen, Tübingen, Germany; Biomolecular Interactions, Max Planck Institute for Developmental Biology, Tübingen, Germany
- Julianus Pfeuffer
- European Bioinformatics Community for Mass Spectrometry ([email protected]), Denmark; Applied Bioinformatics, Dept. of Computer Science, University of Tübingen, Tübingen, Germany
- Timo Sachsenberg
- European Bioinformatics Community for Mass Spectrometry ([email protected]), Denmark; Applied Bioinformatics, Dept. of Computer Science, University of Tübingen, Tübingen, Germany
- Renee Salz
- European Bioinformatics Community for Mass Spectrometry ([email protected]), Denmark; Center for Molecular and Biomolecular Informatics, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, Nijmegen, the Netherlands
- Patroklos Samaras
- European Bioinformatics Community for Mass Spectrometry ([email protected]), Denmark; Technical University of Munich, Chair for Proteomics and Bioanalytics, Freising, Germany
- Henning Schiebenhoefer
- European Bioinformatics Community for Mass Spectrometry ([email protected]), Denmark; Data Analytics and Computational Statistics, Hasso-Plattner-Institute, Faculty of Digital Engineering, University of Potsdam, Potsdam, Germany; Bioinformatics Unit (MF1), Department for Methods Development and Research Infrastructure, Robert Koch Institute, Berlin, Germany
- Tobias Schmidt
- European Bioinformatics Community for Mass Spectrometry ([email protected]), Denmark; Technical University of Munich, Chair for Proteomics and Bioanalytics, Freising, Germany
- Veit Schwämmle
- European Bioinformatics Community for Mass Spectrometry ([email protected]), Denmark; Department of Biochemistry and Molecular Biology, University of Southern Denmark, Denmark; Corresponding author at: Department of Biochemistry and Molecular Biology, University of Southern Denmark, Denmark.
- Alessio Soggiu
- European Bioinformatics Community for Mass Spectrometry ([email protected]), Denmark; Department of Biomedical, Surgical and Dental Sciences, One Health Unit, University of Milan, Milan, Italy
- Julian Uszkoreit
- European Bioinformatics Community for Mass Spectrometry ([email protected]), Denmark; Ruhr University Bochum, Center for Protein Diagnostics (PRODI), Medical Proteome Analysis, Bochum, Germany; Ruhr University Bochum, Medical Faculty, Medizinisches Proteom-Center, Bochum, Germany
- Tim Van Den Bossche
- European Bioinformatics Community for Mass Spectrometry ([email protected]), Denmark; VIB-UGent Center for Medical Biotechnology, VIB, Ghent, Belgium; Department of Biomolecular Medicine, Ghent University, Ghent, Belgium
- Bart Van Puyvelde
- European Bioinformatics Community for Mass Spectrometry ([email protected]), Denmark; ProGenTomics, Laboratory of Pharmaceutical Biotechnology, Ghent University, Ghent, Belgium
- Joeri Van Strien
- European Bioinformatics Community for Mass Spectrometry ([email protected]), Denmark; Center for Molecular and Biomolecular Informatics, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, Nijmegen, the Netherlands
- Pieter Verschaffelt
- European Bioinformatics Community for Mass Spectrometry ([email protected]), Denmark; VIB-UGent Center for Medical Biotechnology, VIB, Ghent, Belgium; Department of Applied Mathematics, Computer Science and Statistics, Ghent University, Ghent, Belgium
- Henry Webel
- European Bioinformatics Community for Mass Spectrometry ([email protected]), Denmark; Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark
- Sander Willems
- European Bioinformatics Community for Mass Spectrometry ([email protected]), Denmark; ProGenTomics, Laboratory of Pharmaceutical Biotechnology, Ghent University, Ghent, Belgium
- Journal volume & issue
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Vol. 24
pp. 1 – 6
Abstract
The 2020 European Bioinformatics Community for Mass Spectrometry (EuBIC-MS) Developers’ meeting was held from January 13th to January 17th 2020 in Nyborg, Denmark. Among the participants were scientists as well as developers working in the field of computational mass spectrometry (MS) and proteomics. The 4-day program was split between introductory keynote lectures and parallel hackathon sessions. During the latter, the participants developed bioinformatics tools and resources addressing outstanding needs in the community. The hackathons allowed less experienced participants to learn from more advanced computational MS experts, and to actively contribute to highly relevant research projects. We successfully produced several new tools that will be useful to the proteomics community by improving data analysis as well as facilitating future research. All keynote recordings are available on https://doi.org/10.5281/zenodo.3890181.
