Communications Biology (Dec 2022)
Tissue registration and exploration user interfaces in support of a human reference atlas
- Katy Börner,
- Andreas Bueckle,
- Bruce W. Herr,
- Leonard E. Cross,
- Ellen M. Quardokus,
- Elizabeth G. Record,
- Yingnan Ju,
- Jonathan C. Silverstein,
- Kristen M. Browne,
- Sanjay Jain,
- Clive H. Wasserfall,
- Marda L. Jorgensen,
- Jeffrey M. Spraggins,
- N. Heath Patterson,
- Griffin M. Weber
Affiliations
- Katy Börner
- Department of Intelligent Systems Engineering, Luddy School of Informatics, Computing, and Engineering, Indiana University
- Andreas Bueckle
- Department of Intelligent Systems Engineering, Luddy School of Informatics, Computing, and Engineering, Indiana University
- Bruce W. Herr
- Department of Intelligent Systems Engineering, Luddy School of Informatics, Computing, and Engineering, Indiana University
- Leonard E. Cross
- Department of Intelligent Systems Engineering, Luddy School of Informatics, Computing, and Engineering, Indiana University
- Ellen M. Quardokus
- Department of Intelligent Systems Engineering, Luddy School of Informatics, Computing, and Engineering, Indiana University
- Elizabeth G. Record
- Department of Intelligent Systems Engineering, Luddy School of Informatics, Computing, and Engineering, Indiana University
- Yingnan Ju
- Department of Intelligent Systems Engineering, Luddy School of Informatics, Computing, and Engineering, Indiana University
- Jonathan C. Silverstein
- Department of Biomedical Informatics, University of Pittsburgh School of Medicine
- Kristen M. Browne
- Bioinformatics and Computational Biosciences Branch, Office of Cyber Infrastructure and Computational Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health
- Sanjay Jain
- Department of Medicine, Department of Pathology & Immunology, Department of Pediatrics, Washington University School of Medicine
- Clive H. Wasserfall
- Departments of Pathology and Pediatrics, University of Florida
- Marda L. Jorgensen
- Departments of Pathology and Pediatrics, University of Florida
- Jeffrey M. Spraggins
- Mass Spectrometry Research Center, Vanderbilt University
- N. Heath Patterson
- Mass Spectrometry Research Center, Vanderbilt University
- Griffin M. Weber
- Department of Biomedical Informatics, Harvard Medical School
- DOI
- https://doi.org/10.1038/s42003-022-03644-x
- Journal volume & issue
-
Vol. 5,
no. 1
pp. 1 – 9
Abstract
The software tools and user interfaces for the registration and exploration of tissue data for the human reference atlas are presented, providing evaluation metrics for data quality examination and guidance for data acquisition in support of reference atlas construction.
