Breast Cancer: Targets and Therapy (May 2023)
Transcriptome Profiling Analysis of Breast Cancer Cell MCF-7 Treated by Sesamol
Abstract
Jiafa Wu,1 Dongping Luo,2 Jiayun Xu2 1School of Food and Bioengineering, Henan University of Science and Technology, Luoyang, People’s Republic of China; 2The First Affiliated Hospital, Henan University of Science and Technology, Luoyang, People’s Republic of ChinaCorrespondence: Jiafa Wu, School of Food and Bioengineering, Henan University of Science and Technology, Kaiyuan Avenue 263, Luoyang, People’s Republic of China, Email [email protected] Jiayun Xu, The First Affiliated Hospital, Henan University of Science and Technology, Guanlin Avenue 636, Luoyang, People’s Republic of China, Email [email protected]: Breast cancer is a highly malignant tumor that affects a large number of women worldwide. Sesamol, a natural compound, has been shown to exhibit inhibitory effects on various tumors, including breast cancer. However, the underlying mechanism of its action has not been fully explored. In this study, we aimed to investigate the effect of sesamol on the transcriptome of MCF-7 breast cancer cells, in order to better understand its potential as an anti-cancer agent.Methods: The transcriptome profiles of MCF-7 breast cancer cells treated with sesamol were analyzed using Illumina deep-sequencing. The differentially expressed genes (DEGs) between the control and sesamol-treated groups were identified, and GO and KEGG pathway analyses of these DEGs were conducted using ClueGO. Protein–protein interaction (PPI) network of DEGs was mapped on STRING database and visualized by Cytoscape software. Hub genes in the network were screened by Cytohubba plugin of Cytoscape. Prognostic values of hub genes were analyses by the online Kaplan–Meier plotter and validated by qRT-PCR in MCF-7 cells.Results: The results of the study showed that sesamol treatment had a significant effect on the transcriptome of MCF-7 cells, with a total of 351 DEGs identified. Functional enrichment analyses of DEGs revealed their involvement in extracellular matrix (ECM) remodeling, fatty acid metabolism and monocyte chemotaxis. The protein–protein interaction (PPI) network analysis of DEGs resulted in the identification of 10 hub genes, namely IGF2, MMP1, MSLN, CXCL10, WT1, ITGAL, PLD1, MME, TWIST1, and FOXA2. Survival analysis showed that MMP1 and ITGAL were significantly associated with overall survival (OS) and recovery-free survival (RFS) in breast cancer patients.Conclusion: Sesamol may play important roles in extracellular matrix (ECM) remodeling, fatty acid metabolism and cell cycle of MCF-7.Keywords: breast cancer cells, sesamol, transcriptome, differentially expressed genes, GO and KEGG pathway analyses
