Nature Communications (Jul 2019)
Towards a standardized bioinformatics infrastructure for N- and O-glycomics
- Miguel A. Rojas-Macias,
- Julien Mariethoz,
- Peter Andersson,
- Chunsheng Jin,
- Vignesh Venkatakrishnan,
- Nobuyuki P. Aoki,
- Daisuke Shinmachi,
- Christopher Ashwood,
- Katarina Madunic,
- Tao Zhang,
- Rebecca L. Miller,
- Oliver Horlacher,
- Weston B. Struwe,
- Yu Watanabe,
- Shujiro Okuda,
- Fredrik Levander,
- Daniel Kolarich,
- Pauline M. Rudd,
- Manfred Wuhrer,
- Carsten Kettner,
- Nicolle H. Packer,
- Kiyoko F. Aoki-Kinoshita,
- Frédérique Lisacek,
- Niclas G. Karlsson
Affiliations
- Miguel A. Rojas-Macias
- Department of Medical Biochemistry and Cell Biology, Institute of Biomedicine, Sahlgrenska Academy, University of Gothenburg
- Julien Mariethoz
- Proteome Informatics Group, SIB Swiss Institute of Bioinformatics
- Peter Andersson
- Department of Medical Biochemistry and Cell Biology, Institute of Biomedicine, Sahlgrenska Academy, University of Gothenburg
- Chunsheng Jin
- Department of Medical Biochemistry and Cell Biology, Institute of Biomedicine, Sahlgrenska Academy, University of Gothenburg
- Vignesh Venkatakrishnan
- Department of Medical Biochemistry and Cell Biology, Institute of Biomedicine, Sahlgrenska Academy, University of Gothenburg
- Nobuyuki P. Aoki
- Soka University, Hachioji
- Daisuke Shinmachi
- Soka University, Hachioji
- Christopher Ashwood
- Department of Molecular Sciences, Macquarie University
- Katarina Madunic
- Leiden University Medical Center
- Tao Zhang
- Leiden University Medical Center
- Rebecca L. Miller
- Copenhagen Centre for Glycomics, Department of Cellular and Molecular Medicine, University of Copenhagen
- Oliver Horlacher
- Proteome Informatics Group, SIB Swiss Institute of Bioinformatics
- Weston B. Struwe
- Department of Chemistry, Chemistry Research Laboratory, University of Oxford
- Yu Watanabe
- Graduate School of Medical and Dental Sciences, Niigata University
- Shujiro Okuda
- Graduate School of Medical and Dental Sciences, Niigata University
- Fredrik Levander
- National Bioinformatics Infrastructure Sweden, Science for Life Laboratory, Department of Immunotechnology, Lund University
- Daniel Kolarich
- Institute for Glycomics, Gold Coast Campus, Griffith University
- Pauline M. Rudd
- Bioprocessing Technology Institute, AStar
- Manfred Wuhrer
- Leiden University Medical Center
- Carsten Kettner
- Beilstein-Institut
- Nicolle H. Packer
- Department of Molecular Sciences, Macquarie University
- Kiyoko F. Aoki-Kinoshita
- Soka University, Hachioji
- Frédérique Lisacek
- Proteome Informatics Group, SIB Swiss Institute of Bioinformatics
- Niclas G. Karlsson
- Department of Medical Biochemistry and Cell Biology, Institute of Biomedicine, Sahlgrenska Academy, University of Gothenburg
- DOI
- https://doi.org/10.1038/s41467-019-11131-x
- Journal volume & issue
-
Vol. 10,
no. 1
pp. 1 – 10
Abstract
Glycomics is gaining momentum in basic, translational and clinical research. Here, the authors review current reporting standards and analysis tools for mass-spectrometry-based glycomics, and propose an e-infrastructure for standardized reporting and online deposition of glycomics data.
