To study changes in phytoplankton community composition on different timescales, an automated flow cytometer (CytoSub, CytoBuoy b.v.) was deployed at the MAREL Carnot automated monitoring station in Boulogne-sur-Mer (eastern English Channel, France) during spring (2021 and 2022) and summer (2022), following an Eulerian approach. Phytoplankton dynamics were recorded every 2 h, distinguishing 11 phytoplankton functional groups (PFGs) based on optical and fluorescence properties. This enabled detailed characterization of PFG successions, including MicroRED (mostly diatoms) and NanoRED (mostly haptophytes of the species Phaeocystis globosa) transitions in spring, as well as a summer dominance by PicoORG (picocyanobacteria, mostly of the genus Synechococcus) and PicoRED. Four rare events, including a salinity drop (April 2021), strong winds (May 2021 and April 2022), and a marine heat wave (July 2022), caused rapid shifts in phytoplankton community assemblage. Empirical mode decomposition (EMD) and Lomb–Scargle periodogram (LSP) analyses revealed that 85±10 % of variability in total phytoplankton abundance, red fluorescence (a proxy of chlorophyll a), and Shannon diversity occurred on relatively short timescales (9 h to 11 d) for time series of several months, highlighting the value of high-frequency monitoring in capturing ecological dynamics under macrotidal conditions in the eastern English Channel.
