Data in Brief (Jun 2020)
Dataset for the combined transcriptome assembly of M. oleifera and functional annotation
- K. Mohamed Shafi,
- Adwait G. Joshi,
- Iyer Meenakshi,
- Shaik Naseer Pasha,
- K. Harini,
- Jarjapu Mahita,
- Radha Sivarajan Sajeevan,
- Snehal D. Karpe,
- Pritha Ghosh,
- Sathyanarayanan Nitish,
- A. Gandhimathi,
- Oommen K. Mathew,
- Subramanian Hari Prasanna,
- Manoharan Malini,
- Eshita Mutt,
- Mahantesha Naika,
- Nithin Ravooru,
- Rajas M. Rao,
- Prashant N. Shingate,
- Anshul Sukhwal,
- Margaret S. Sunitha,
- Atul K. Upadhyay,
- Rithvik S. Vinekar,
- Ramanathan Sowdhamini
Affiliations
- K. Mohamed Shafi
- National Centre for Biological Sciences (TIFR), GKVK Campus, Bangalore 560065, Karnataka, India; The University of Trans-Disciplinary Health Sciences & Technology (TDU), Yelahanka, Bangalore 560064, Karnataka, India
- Adwait G. Joshi
- National Centre for Biological Sciences (TIFR), GKVK Campus, Bangalore 560065, Karnataka, India
- Iyer Meenakshi
- National Centre for Biological Sciences (TIFR), GKVK Campus, Bangalore 560065, Karnataka, India
- Shaik Naseer Pasha
- National Centre for Biological Sciences (TIFR), GKVK Campus, Bangalore 560065, Karnataka, India
- K. Harini
- National Centre for Biological Sciences (TIFR), GKVK Campus, Bangalore 560065, Karnataka, India
- Jarjapu Mahita
- National Centre for Biological Sciences (TIFR), GKVK Campus, Bangalore 560065, Karnataka, India
- Radha Sivarajan Sajeevan
- National Centre for Biological Sciences (TIFR), GKVK Campus, Bangalore 560065, Karnataka, India
- Snehal D. Karpe
- National Centre for Biological Sciences (TIFR), GKVK Campus, Bangalore 560065, Karnataka, India
- Pritha Ghosh
- National Centre for Biological Sciences (TIFR), GKVK Campus, Bangalore 560065, Karnataka, India
- Sathyanarayanan Nitish
- National Centre for Biological Sciences (TIFR), GKVK Campus, Bangalore 560065, Karnataka, India; The University of Trans-Disciplinary Health Sciences & Technology (TDU), Yelahanka, Bangalore 560064, Karnataka, India
- A. Gandhimathi
- National Centre for Biological Sciences (TIFR), GKVK Campus, Bangalore 560065, Karnataka, India
- Oommen K. Mathew
- National Centre for Biological Sciences (TIFR), GKVK Campus, Bangalore 560065, Karnataka, India
- Subramanian Hari Prasanna
- National Centre for Biological Sciences (TIFR), GKVK Campus, Bangalore 560065, Karnataka, India
- Manoharan Malini
- National Centre for Biological Sciences (TIFR), GKVK Campus, Bangalore 560065, Karnataka, India
- Eshita Mutt
- National Centre for Biological Sciences (TIFR), GKVK Campus, Bangalore 560065, Karnataka, India
- Mahantesha Naika
- National Centre for Biological Sciences (TIFR), GKVK Campus, Bangalore 560065, Karnataka, India
- Nithin Ravooru
- National Centre for Biological Sciences (TIFR), GKVK Campus, Bangalore 560065, Karnataka, India
- Rajas M. Rao
- National Centre for Biological Sciences (TIFR), GKVK Campus, Bangalore 560065, Karnataka, India
- Prashant N. Shingate
- National Centre for Biological Sciences (TIFR), GKVK Campus, Bangalore 560065, Karnataka, India
- Anshul Sukhwal
- National Centre for Biological Sciences (TIFR), GKVK Campus, Bangalore 560065, Karnataka, India
- Margaret S. Sunitha
- National Centre for Biological Sciences (TIFR), GKVK Campus, Bangalore 560065, Karnataka, India
- Atul K. Upadhyay
- National Centre for Biological Sciences (TIFR), GKVK Campus, Bangalore 560065, Karnataka, India; Department of Biotechnology, Thapar Institute of Engineering and Technology, Patiala, Punjab 147004, India
- Rithvik S. Vinekar
- National Centre for Biological Sciences (TIFR), GKVK Campus, Bangalore 560065, Karnataka, India
- Ramanathan Sowdhamini
- National Centre for Biological Sciences (TIFR), GKVK Campus, Bangalore 560065, Karnataka, India; Corresponding author.
- Journal volume & issue
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Vol. 30
p. 105416
Abstract
In this paper, we present the data acquired during transcriptome analysis of the plant Moringa oleifera [1] from five different tissues (root, stem, leaf, flower and seed) by RNA sequencing. A total of 271 million reads were assembled with an N50 of 2094 bp. The combined transcriptome was assessed for transcript abundance across five tissues. The protein coding genes identified from the transcripts were annotated and used for orthology analysis. Further, enzymes involved in the biosynthesis of select medicinally important secondary metabolites, vitamins and ion transporters were identified and their expression levels across tissues were examined. The data generated by RNA sequencing has been deposited to NCBI public repository under the accession number PRJNA394193 (https://www.ncbi.nlm.nih.gov/bioproject/PRJNA394193).