Specifications of standards in systems and synthetic biology: status and developments in 2021

Schreiber Falk; Gleeson Padraig; Golebiewski Martin; Gorochowski Thomas E.; Hucka Michael; Keating Sarah M.; König Matthias; Myers Chris J.; Nickerson David P.; Sommer Björn; Waltemath Dagmar

doi:10.1515/jib-2021-0026

Journal of Integrative Bioinformatics (Oct 2021)

Specifications of standards in systems and synthetic biology: status and developments in 2021

Schreiber Falk,
Gleeson Padraig,
Golebiewski Martin,
Gorochowski Thomas E.,
Hucka Michael,
Keating Sarah M.,
König Matthias,
Myers Chris J.,
Nickerson David P.,
Sommer Björn,
Waltemath Dagmar

Affiliations

Schreiber Falk: Department of Computer and Information Science, University of Konstanz, Konstanz, Germany
Gleeson Padraig: University College London, London, UK
Golebiewski Martin: Heidelberg Institute for Theoretical Studies (HITS), Heidelberg, Germany
Gorochowski Thomas E.: School of Biological Sciences, University of Bristol, Bristol, UK
Hucka Michael: California Institute of Technology, Pasadena, USA
Keating Sarah M.: University College London, London, UK
König Matthias: Institute for Theoretical Biology, Humboldt-University Berlin, Berlin, Germany
Myers Chris J.: Department of Electrical, Computer, and Energy Eng., University of Colorado Boulder, Boulder, USA
Nickerson David P.: Auckland Bioengineering Institute, University of Auckland, Auckland, New Zealand
Sommer Björn: Royal College of Arts, London, UK
Waltemath Dagmar: University Medicine Greifswald, Rostock, Germany

DOI: https://doi.org/10.1515/jib-2021-0026
Journal volume & issue: Vol. 18, no. 3
pp. 5 – 95

Abstract

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This special issue of the Journal of Integrative Bioinformatics contains updated specifications of COMBINE standards in systems and synthetic biology. The 2021 special issue presents four updates of standards: Synthetic Biology Open Language Visual Version 2.3, Synthetic Biology Open Language Visual Version 3.0, Simulation Experiment Description Markup Language Level 1 Version 4, and OMEX Metadata specification Version 1.2. This document can also be consulted to identify the latest specifications of all COMBINE standards.

Published in Journal of Integrative Bioinformatics

ISSN: 1613-4516 (Online)
Publisher: De Gruyter
Country of publisher: Germany
LCC subjects: Technology: Chemical technology: Biotechnology
Website: https://www.degruyter.com/view/j/jib

About the journal