Image dataset of urine test results on petri dishes for deep learning classification
Gabriel Rodrigues da Silva,
Igor Batista Rosmaninho,
Eduardo Zancul,
Vanessa Rita de Oliveira,
Gabriela Rodrigues Francisco,
Nathamy Fernanda dos Santos,
Karin de Mello Macêdo,
Amauri José da Silva,
Érika Knabben de Lima,
Mara Elisa Borsato Lemo,
Alessandra Maldonado,
Maria Emilia G. Moura,
Flávia Helena da Silva,
Gustavo Stuani Guimarães
Affiliations
Gabriel Rodrigues da Silva
University of São Paulo, School of Engineering, Av. Prof. Luciano Gualberto, 1380, Cidade Universitária, São Paulo-SP, 05508-010, Brazil
Igor Batista Rosmaninho
University of São Paulo, School of Engineering, Av. Prof. Luciano Gualberto, 1380, Cidade Universitária, São Paulo-SP, 05508-010, Brazil
Eduardo Zancul
Corresponding author.; University of São Paulo, School of Engineering, Av. Prof. Luciano Gualberto, 1380, Cidade Universitária, São Paulo-SP, 05508-010, Brazil
Vanessa Rita de Oliveira
Grupo Fleury – Clinical Analysis, Av. Morumbi, 8860, São Paulo-SP, Brazil
Gabriela Rodrigues Francisco
Grupo Fleury – Clinical Analysis, Av. Morumbi, 8860, São Paulo-SP, Brazil
Nathamy Fernanda dos Santos
Grupo Fleury – Clinical Analysis, Av. Morumbi, 8860, São Paulo-SP, Brazil
Karin de Mello Macêdo
Grupo Fleury – Clinical Analysis, Av. Morumbi, 8860, São Paulo-SP, Brazil
Amauri José da Silva
Grupo Fleury – Clinical Analysis, Av. Morumbi, 8860, São Paulo-SP, Brazil
Érika Knabben de Lima
Grupo Fleury – Clinical Analysis, Av. Morumbi, 8860, São Paulo-SP, Brazil
Mara Elisa Borsato Lemo
Grupo Fleury – Clinical Analysis, Av. Morumbi, 8860, São Paulo-SP, Brazil
Alessandra Maldonado
Grupo Fleury – Clinical Analysis, Av. Morumbi, 8860, São Paulo-SP, Brazil
Maria Emilia G. Moura
Grupo Fleury – Clinical Analysis, Av. Morumbi, 8860, São Paulo-SP, Brazil
Flávia Helena da Silva
Grupo Fleury – Clinical Analysis, Av. Morumbi, 8860, São Paulo-SP, Brazil
Gustavo Stuani Guimarães
Grupo Fleury – Clinical Analysis, Av. Morumbi, 8860, São Paulo-SP, Brazil
Recent advancements in image analysis and interpretation technologies using computer vision techniques have shown potential for novel applications in clinical microbiology laboratories to support task automation aiming for faster and more reliable diagnostics. Deep learning models can be a valuable tool in the screening process, helping technicians spend less time classifying no-growth results and quickly separating the categories of tests that deserve further analysis. In this context, creating datasets with correctly classified images is fundamental for developing and improving such models. Therefore, a dataset of urine test Petri dishes images was collected following a standardized process, with controlled conditions of positioning and lighting. Image acquisition was conducted by applying a hardware chamber equipped with a led lightning source and a smartphone camera with 12 MP resolution. A software application was developed to support image classification and handling. Experienced microbiologists classified the images according to the positive, negative, and uncertain test results. The resulting dataset contains a total of 1500 images and can support the development of deep learning algorithms to classify urine exams according to their microbial growth.