EBioMedicine (Aug 2016)

Identification of Circulating Tumor DNA for the Early Detection of Small-cell Lung Cancer

  • Lynnette Fernandez-Cuesta,
  • Sandra Perdomo,
  • Patrice H. Avogbe,
  • Noemie Leblay,
  • Tiffany M. Delhomme,
  • Valerie Gaborieau,
  • Behnoush Abedi-Ardekani,
  • Estelle Chanudet,
  • Magali Olivier,
  • David Zaridze,
  • Anush Mukeria,
  • Marta Vilensky,
  • Ivana Holcatova,
  • Jerry Polesel,
  • Lorenzo Simonato,
  • Cristina Canova,
  • Pagona Lagiou,
  • Christian Brambilla,
  • Elisabeth Brambilla,
  • Graham Byrnes,
  • Ghislaine Scelo,
  • Florence Le Calvez-Kelm,
  • Matthieu Foll,
  • James D. McKay,
  • Paul Brennan

DOI
https://doi.org/10.1016/j.ebiom.2016.06.032
Journal volume & issue
Vol. 10, no. C
pp. 117 – 123

Abstract

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Circulating tumor DNA (ctDNA) is emerging as a key potential biomarker for post-diagnosis surveillance but it may also play a crucial role in the detection of pre-clinical cancer. Small-cell lung cancer (SCLC) is an excellent candidate for early detection given there are no successful therapeutic options for late-stage disease, and it displays almost universal inactivation of TP53. We assessed the presence of TP53 mutations in the cell-free DNA (cfDNA) extracted from the plasma of 51 SCLC cases and 123 non-cancer controls. We identified mutations using a pipeline specifically designed to accurately detect variants at very low fractions. We detected TP53 mutations in the cfDNA of 49% SCLC patients and 11.4% of non-cancer controls. When stratifying the 51 initial SCLC cases by stage, TP53 mutations were detected in the cfDNA of 35.7% early-stage and 54.1% late-stage SCLC patients. The results in the controls were further replicated in 10.8% of an independent series of 102 non-cancer controls. The detection of TP53 mutations in 11% of the 225 non-cancer controls suggests that somatic mutations in cfDNA among individuals without any cancer diagnosis is a common occurrence, and poses serious challenges for the development of ctDNA screening tests.

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