RIC-Unet: An Improved Neural Network Based on Unet for Nuclei Segmentation in Histology Images

Abstract

As a prerequisite for cell detection, cell classification, and cancer grading, nuclei segmentation in histology images has attracted wide attention in recent years. It is quite a challenging task due to the diversity in staining procedure, cell morphology, and cell arrangement between different histopathology images, especially with different color contrasts. In this paper, an Unet-based neural network, RIC-Unet (residual-inception-channel attention-Unet), for nuclei segmentation is proposed. The techniques of residual blocks, multi-scale and channel attention mechanism are applied on RIC-Unet to segment nuclei more accurately. RIC-Unet is compared with two traditional segmentation methods: CP and Fiji, two original CNN methods: CNN2, CNN3, and original U-net on The Cancer Genomic Atlas (TCGA) dataset. Besides, in this paper, we use Dice, F1-score, and aggregated Jaccard index to evaluate these methods. The average of RIC-Unet and U-net on these three indicators are 0.8008 versus 0.7844, 0.8278 versus 0.8155, and 0.5635 versus 0.5462. In addition, our method won the third place in the computational precision medicine nuclei segmentation challenge together with MICCAI 2018.

Keywords

• Computational pathology
• nuclei segmentation
• residual block
• deep learning