We investigate the structure of the medium formed in heavy ion collisions using three different models: the Color String Percolation Model (CSPM), the Core–Shell-Color String Percolation Model (CSCSPM), and the Color Glass Condensate (CGC) framework. We analyze the radial distribution function of the transverse representation of color flux tubes in each model to determine the medium’s structure. Our results indicate that the CSPM behaves as an ideal gas, while the CSCSPM exhibits a structural phase transition from a gas-like to a liquid-like structure. Additionally, our analysis of the CGC framework suggests that it produces systems that behave like non-ideal gases for AuAu central collisions at RHIC energies and liquid-like structures for PbPb central collisions at LHC energies.