First linkage maps and a pilot QTL analysis for early growth performance in common dentex (Dentex dentex) and sharpsnout seabream (Diplodus puntazzo)

Abstract

Two potential candidate species for the Mediterranean aquaculture–the common dentex (Dentex dentex) and the sharpsnout seabream (Diplodus puntazzo)-are used in the present study in order to depict their genetic architecture for the first time. We have constructed the first linkage maps for both species using SNP markers derived from ddRAD sequencing. The quality of the maps produced was verified from comparative analysis with the most studied and phylogenetically related sparid species, the gilthead sea bream (Sparus aurata). A high genetic similarity was detected, based on the high number of alignments of the two new species against the reference genome of the gilthead seabream. Furthermore, a pilot study for QTL analysis per species was performed using phenotypic measurements at the juvenile stage (approximately 2 g) and revealed putative genomic areas which affect juvenile growth performance. One of those areas was located close to a candidate gene (ANGPTL6 gene) which affects growth performance. The present study improves our knowledge on the genetic architecture of those two species by presenting not only the first linkage maps, but also by providing some indications for growth performance QTL. The results can be used as a starting point to initiate further research for the genetic improvement of these two new species.

Keywords

• Common dentex (Dentex dentex)
• Sharpsnout seabream (Diplodus puntazzo)
• QTL analysis
• Linkage analysis
• Comparative analysis