Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022

König Matthias; Gleeson Padraig; Golebiewski Martin; Gorochowski Thomas E.; Hucka Michael; Keating Sarah M.; Myers Chris J.; Nickerson David P.; Sommer Björn; Waltemath Dagmar; Schreiber Falk

doi:10.1515/jib-2023-0004

Journal of Integrative Bioinformatics (Mar 2023)

Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022

König Matthias,
Gleeson Padraig,
Golebiewski Martin,
Gorochowski Thomas E.,
Hucka Michael,
Keating Sarah M.,
Myers Chris J.,
Nickerson David P.,
Sommer Björn,
Waltemath Dagmar,
Schreiber Falk

Affiliations

König Matthias: Institute for Biology, Institute for Theoretical Biology, Humboldt-University Berlin, Berlin, Germany
Gleeson Padraig: University College London, London, UK
Golebiewski Martin: Heidelberg Institute for Theoretical Studies (HITS), Heidelberg, Germany
Gorochowski Thomas E.: School of Biological Sciences, University of Bristol, Bristol, UK
Hucka Michael: California Institute of Technology, Pasadena, USA
Keating Sarah M.: University College London, London, UK
Myers Chris J.: Department of Electrical, Computer, and Energy Engineering, University of Colorado Boulder, Boulder, USA
Nickerson David P.: Auckland Bioengineering Institute, University of Auckland, Auckland, New Zealand
Sommer Björn: Royal College of Arts, London, UK
Waltemath Dagmar: Medical Informatics Laboratory, University Medicine Greifswald, Greifswald, Germany
Schreiber Falk: Department of Computer and Information Science, University of Konstanz, Konstanz, Germany

DOI: https://doi.org/10.1515/jib-2023-0004
Journal volume & issue: Vol. 20, no. 1

Abstract

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This special issue of the Journal of Integrative Bioinformatics contains updated specifications of COMBINE standards in systems and synthetic biology. The 2022 special issue presents three updates to the standards: CellML 2.0.1, SBML Level 3 Package: Spatial Processes, Version 1, Release 1, and Synthetic Biology Open Language (SBOL) Version 3.1.0. This document can also be used to identify the latest specifications for all COMBINE standards. In addition, this editorial provides a brief overview of the COMBINE 2022 meeting in Berlin.

Published in Journal of Integrative Bioinformatics

ISSN: 1613-4516 (Online)
Publisher: De Gruyter
Country of publisher: Germany
LCC subjects: Technology: Chemical technology: Biotechnology
Website: https://www.degruyter.com/view/j/jib

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