BFDA: A MATLAB Toolbox for Bayesian Functional Data Analysis

Abstract

We provide a MATLAB toolbox, BFDA, that implements a Bayesian hierarchical model to smooth multiple functional data samples with the assumptions of the same underlying Gaussian process distribution, a Gaussian process prior for the mean function, and an Inverse-Wishart process prior for the covariance function. This model-based approach can borrow strength from all functional data samples to increase the smoothing accuracy, as well as simultaneously estimate the mean-covariance functions. An option of approximating the Bayesian inference process using cubic B-spline basis functions is integrated in BFDA, which allows for efficiently dealing with high-dimensional functional data. Examples of using BFDA in various scenarios and conducting follow-up functional regression are provided. The advantages of BFDA include: (1) simultaneously smooths multiple functional data samples and estimates the mean-covariance functions in a nonparametric way; (2) flexibly deals with sparse and high-dimensional functional data with stationary and nonstationary covariance functions, and without the requirement of common observation grids; (3) provides accurately smoothed functional data for follow-up analysis.

Keywords

• functional data analysis
• bayesian hierarchical model
• gaussian process
• cubic b-spline basis functions
• matlab