BioTechniques (Oct 2020)

A clinically validated human capillary blood transcriptome test for global systems biology studies

  • Ryan Toma,
  • Nathan Duval,
  • Benjamin Pelle,
  • Matthew M Parks,
  • Vishakh Gopu,
  • Pedro J Torres,
  • Francine R Camacho,
  • Nan Shen,
  • Subha Krishnan,
  • Andrew Hatch,
  • Hal Tily,
  • Ally Perlina,
  • Guruduth Banavar,
  • Momchilo Vuyisich

DOI
https://doi.org/10.2144/btn-2020-0088
Journal volume & issue
Vol. 69, no. 4
pp. 289 – 301

Abstract

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To prevent and treat chronic diseases, including cancer, a global application of systems biology is needed. We report here a whole blood transcriptome test that needs only 50 μl of capillary (fingerprick) blood. This test is suitable for global applications because the samples are preserved at ambient temperature for up to 4 weeks and the RNA preservative inactivates all pathogens, enabling safe transportation. Both the laboratory and bioinformatic steps are automated and performed in a clinical lab, which minimizes batch effects and creates unbiased datasets. Given its clinical testing performance and accessibility to traditionally underrepresented and diverse populations, this test offers a unique ability to reveal molecular mechanisms of disease and enable longitudinal, population-scale studies.

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