ReMatch: a web-based tool to construct, store and share stoichiometric metabolic models with carbon maps for metabolic flux analysis

Pitkänen Esa; Åkerlund Arto; Rantanen Ari; Jouhten Paula; Ukkonen Esko

doi:10.1515/jib-2008-102

Journal of Integrative Bioinformatics (Jun 2008)

ReMatch: a web-based tool to construct, store and share stoichiometric metabolic models with carbon maps for metabolic flux analysis

Pitkänen Esa,
Åkerlund Arto,
Rantanen Ari,
Jouhten Paula,
Ukkonen Esko

Affiliations

Pitkänen Esa: Department of Computer Science, University of Helsinki, Finland
Åkerlund Arto: Department of Computer Science, University of Helsinki, Finland
Rantanen Ari: Institute of Molecular Systems Biology, ETH Zurich, Switzerland
Jouhten Paula: Department of Computer Science, University of Helsinki, Finland Finland
Ukkonen Esko: Department of Computer Science, University of Helsinki, Finland

DOI: https://doi.org/10.1515/jib-2008-102
Journal volume & issue: Vol. 5, no. 2
pp. 188 – 200

Abstract

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y ReMatch is a web-based, user-friendly tool that constructs stoichiometric network models for metabolic flux analysis, integrating user-developed models into a database collected from several comprehensive metabolic data resources, including KEGG, MetaCyc and CheBI. Particularly, ReMatch augments the metabolic reactions of the model with carbon mappings to facilitate 13C metabolic flux analysis.

Published in Journal of Integrative Bioinformatics

ISSN: 1613-4516 (Online)
Publisher: De Gruyter
Country of publisher: Germany
LCC subjects: Technology: Chemical technology: Biotechnology
Website: https://www.degruyter.com/view/j/jib

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