PLoS ONE (Jan 2019)

DCG++: A data-driven metric for geometric pattern recognition.

  • Jiahui Guan,
  • Fushing Hsieh,
  • Patrice Koehl

DOI
https://doi.org/10.1371/journal.pone.0217838
Journal volume & issue
Vol. 14, no. 6
p. e0217838

Abstract

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Clustering large and complex data sets whose partitions may adopt arbitrary shapes remains a difficult challenge. Part of this challenge comes from the difficulty in defining a similarity measure between the data points that captures the underlying geometry of those data points. In this paper, we propose an algorithm, DCG++ that generates such a similarity measure that is data-driven and ultrametric. DCG++ uses Markov Chain Random Walks to capture the intrinsic geometry of data, scans possible scales, and combines all this information using a simple procedure that is shown to generate an ultrametric. We validate the effectiveness of this similarity measure within the context of clustering on synthetic data with complex geometry, on a real-world data set containing segmented audio records of frog calls described by mel-frequency cepstral coefficients, as well as on an image segmentation problem. The experimental results show a significant improvement on performance with the DCG-based ultrametric compared to using an empirical distance measure.