Nature Communications (Sep 2022)

Multi-context genetic modeling of transcriptional regulation resolves novel disease loci

  • Mike Thompson,
  • Mary Grace Gordon,
  • Andrew Lu,
  • Anchit Tandon,
  • Eran Halperin,
  • Alexander Gusev,
  • Chun Jimmie Ye,
  • Brunilda Balliu,
  • Noah Zaitlen

DOI
https://doi.org/10.1038/s41467-022-33212-0
Journal volume & issue
Vol. 13, no. 1
pp. 1 – 15

Abstract

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Transcriptome-wide association studies (TWAS) often ignore the specificity and sharing of effects across contexts (e.g., tissues). Here, the authors describe a method to split genetic effects into context-shared and context-specific terms. They apply their method to tissue and single-cell RNA-seq and show improved power in TWAS.