Soil sampling methods for microbial study in montane regions

Abstract

Soil microorganism studies are crucial in ecological and biological research. However, the lack of standardized analytical methods for sampling makes it challenging to compare studies and obtain consistent results. Therefore, it is essential to establish standardized sampling methods in the field. Our study used a stratification method to collect 120 soil samples from various altitudinal ranges on Cangshan Mountain in China, with an altitude of 4122 m, and incredible microorganism biodiversity. This site provides an ideal landscape for studying elevation patterns in microorganisms. We conducted analyses on the variations of depth and stratification used in the sampling process, as these factors have been found to impact microbial diversity, elevation patterns, and community assembly mechanisms. We found that increasing the sampling depth provided more valuable research results by revealing elevation patterns of soil microorganisms. We therefore recommend sampling to a depth of 35 cm with stratification to determine the overall soil microbial diversity. A depth of 25 cm is suitable for studying elevation patterns with stratification. For investigating community assembly mechanisms without stratification, a depth of 15 cm is recommended. When exploring a specific taxon, the sampling depth can be adjusted accordingly. For studying the elevation pattern of archaea, a depth of 20 cm is appropriate. In the case of fungi, a depth of 40 cm is recommended, while a depth of 20 cm is suitable for studying elevation patterns. This study emphasizes the importance of standardization in sampling methods, particularly along the soil profiles, when studying soil microbiomes in montane areas. These recommendations should be adopted in future research to achieve more consistent and reliable results in the field.

Keywords

• Standardization
• Sampling method
• Microbiology
• Diversity
• Elevation pattern
• Assembly mechanism